Protein : Qrob_P0040110.2 Q. robur
Protein Identifier  ? Qrob_P0040110.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K11518 - mitochondrial import receptor subunit TOM40 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 311  
Kegg Orthology  K11518
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005741 mitochondrial outer membrane The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_007667 1 309 + 309 Gaps:4 100.00 313 83.71 0.0 Translocase of the outer mitochondrial membrane 40
blastp_kegg lcl|cic:CICLE_v10032173mg 1 309 + 309 Gaps:2 100.00 311 83.92 0.0 hypothetical protein
blastp_kegg lcl|cit:102616410 1 309 + 309 Gaps:2 100.00 311 83.92 0.0 mitochondrial import receptor subunit TOM40-1-like
blastp_kegg lcl|sot:102587266 1 310 + 310 Gaps:2 100.00 312 82.37 0.0 mitochondrial import receptor subunit TOM40-1-like
blastp_kegg lcl|pxb:103932065 1 310 + 310 Gaps:2 100.00 312 83.33 0.0 mitochondrial import receptor subunit TOM40-1-like
blastp_kegg lcl|sly:101262530 1 310 + 310 Gaps:2 100.00 312 81.73 0.0 mitochondrial import receptor subunit TOM40-1-like
blastp_kegg lcl|pmum:103322524 17 310 + 294 none 94.23 312 86.39 0.0 mitochondrial import receptor subunit TOM40-1-like
blastp_kegg lcl|pper:PRUPE_ppa008962mg 17 310 + 294 none 94.23 312 86.39 0.0 hypothetical protein
blastp_kegg lcl|mdm:103449844 1 310 + 310 Gaps:2 100.00 312 83.01 0.0 mitochondrial import receptor subunit TOM40-1-like
blastp_kegg lcl|vvi:100268104 23 310 + 288 none 93.20 309 88.54 0.0 mitochondrial import receptor subunit TOM40 homolog 1-like
blastp_uniprot_sprot sp|Q9LHE5|TO401_ARATH 1 309 + 309 Gaps:2 100.00 309 73.46 1e-165 Mitochondrial import receptor subunit TOM40-1 OS Arabidopsis thaliana GN TOM40-1 PE 1 SV 3
blastp_uniprot_sprot sp|Q9SX55|TO402_ARATH 1 306 + 306 Gaps:3 99.03 310 63.52 4e-141 Probable mitochondrial import receptor subunit TOM40-2 OS Arabidopsis thaliana GN TOM40-2 PE 2 SV 3
blastp_uniprot_sprot sp|Q6P825|TOM40_XENTR 5 309 + 305 Gaps:52 92.56 336 31.51 7e-30 Mitochondrial import receptor subunit TOM40 homolog OS Xenopus tropicalis GN tomm40 PE 2 SV 1
blastp_uniprot_sprot sp|Q7ZTM6|TOM40_XENLA 5 309 + 305 Gaps:52 92.56 336 31.51 1e-29 Mitochondrial import receptor subunit TOM40 homolog OS Xenopus laevis GN tomm40 PE 2 SV 1
blastp_uniprot_sprot sp|O13656|TOM40_SCHPO 51 308 + 258 Gaps:47 79.36 344 32.60 4e-28 Probable mitochondrial import receptor subunit tom40 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN tom40 PE 3 SV 3
blastp_uniprot_sprot sp|Q9CZR3|TM40L_MOUSE 3 309 + 307 Gaps:44 98.38 308 32.67 5e-27 Mitochondrial import receptor subunit TOM40B OS Mus musculus GN Tomm40l PE 2 SV 1
blastp_uniprot_sprot sp|A4F267|TM40L_RAT 3 309 + 307 Gaps:44 98.38 308 32.67 7e-27 Mitochondrial import receptor subunit TOM40B OS Rattus norvegicus GN Tomm40l PE 1 SV 1
blastp_uniprot_sprot sp|Q9QYA2|TOM40_MOUSE 29 309 + 281 Gaps:40 78.95 361 30.88 1e-25 Mitochondrial import receptor subunit TOM40 homolog OS Mus musculus GN Tomm40 PE 1 SV 3
blastp_uniprot_sprot sp|Q75Q40|TOM40_RAT 29 309 + 281 Gaps:40 78.95 361 30.88 1e-25 Mitochondrial import receptor subunit TOM40 homolog OS Rattus norvegicus GN Tomm40 PE 1 SV 1
blastp_uniprot_sprot sp|O96008|TOM40_HUMAN 29 309 + 281 Gaps:40 78.95 361 30.88 2e-25 Mitochondrial import receptor subunit TOM40 homolog OS Homo sapiens GN TOMM40 PE 1 SV 1
rpsblast_cdd gnl|CDD|132766 29 309 + 281 Gaps:22 100.00 279 41.22 6e-87 cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5 Tom6 Tom7 and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane formed by Tim23 to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane most likely not via a lateral opening in the pore but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
rpsblast_cdd gnl|CDD|201807 31 303 + 273 Gaps:37 100.00 272 30.88 2e-55 pfam01459 Porin_3 Eukaryotic porin.
rpsblast_cdd gnl|CDD|132765 35 309 + 275 Gaps:14 99.64 274 16.48 6e-20 cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
rpsblast_cdd gnl|CDD|130062 36 189 + 154 Gaps:27 92.55 161 32.89 8e-14 TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. The mitochondrial protein translocase (MPT) family which brings nuclearly encoded preproteins into mitochondria is very complex with 19 currently identified protein constituents.These proteins include several chaperone proteins four proteins of the outer membrane translocase (Tom) import receptor five proteins of the Tom channel complex five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
rpsblast_cdd gnl|CDD|132767 152 306 + 155 Gaps:5 39.86 276 38.18 9e-08 cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase an interaction that renders mitochondria less susceptible to pro-apoptotic signals most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death a proposed involvement in forming the mitochondrial permeability transition pore which is characteristic for damaged mitochondria and apoptosis has been challenged by more recent studies.
rpsblast_kog gnl|CDD|38506 15 309 + 295 Gaps:13 98.70 308 33.88 2e-73 KOG3296 KOG3296 KOG3296 Translocase of outer mitochondrial membrane complex subunit TOM40 [Intracellular trafficking secretion and vesicular transport].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 23 310 288 PTHR10802:SF2 none none none
Gene3D 20 309 290 G3DSA:2.40.160.10 none none IPR023614
PANTHER 23 310 288 PTHR10802 none none none
Pfam 31 303 273 PF01459 none Eukaryotic porin IPR027246

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8

0 Targeting