Protein : Qrob_P0039950.2 Q. robur
Protein Identifier  ? Qrob_P0039950.2 Organism . Name  Quercus robur
Score  43.0 Score Type  egn
Protein Description  (M=1) KOG4251 - Calcium binding protein [General function prediction only]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 340  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005509 calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_007671 1 337 + 337 Gaps:7 89.01 373 79.22 0.0 Calcium-binding EF hand family protein isoform 1
blastp_kegg lcl|pper:PRUPE_ppa007408mg 2 337 + 336 Gaps:16 88.35 369 79.45 0.0 hypothetical protein
blastp_kegg lcl|mdm:103403387 2 337 + 336 Gaps:5 88.74 373 77.95 0.0 calumenin
blastp_kegg lcl|pmum:103321104 4 337 + 334 Gaps:16 87.80 369 79.63 0.0 calumenin
blastp_kegg lcl|pop:POPTR_0005s08980g 1 337 + 337 Gaps:3 89.60 375 75.89 0.0 POPTRDRAFT_760229 calcium-binding EF hand family protein
blastp_kegg lcl|fve:101307688 1 337 + 337 Gaps:15 89.01 364 79.63 0.0 calumenin-B-like
blastp_kegg lcl|pxb:103943234 2 337 + 336 Gaps:12 88.71 372 78.18 0.0 calumenin
blastp_kegg lcl|mdm:103423695 4 337 + 334 Gaps:11 87.97 374 78.12 0.0 calumenin-A-like
blastp_kegg lcl|cic:CICLE_v10031861mg 1 337 + 337 Gaps:7 89.30 374 78.44 0.0 hypothetical protein
blastp_kegg lcl|cit:102617216 1 337 + 337 Gaps:7 89.30 374 78.44 0.0 calumenin-like
blastp_uniprot_sprot sp|Q6XLQ7|CALU_RABIT 121 274 + 154 Gaps:8 49.52 315 32.05 1e-10 Calumenin OS Oryctolagus cuniculus GN CALU PE 1 SV 2
blastp_uniprot_sprot sp|O43852|CALU_HUMAN 121 274 + 154 Gaps:8 49.52 315 31.41 3e-10 Calumenin OS Homo sapiens GN CALU PE 1 SV 2
blastp_uniprot_sprot sp|Q28BT4|CALU_XENTR 121 266 + 146 Gaps:8 46.98 315 31.76 3e-10 Calumenin OS Xenopus tropicalis GN calu PE 2 SV 1
blastp_uniprot_sprot sp|Q5RDD8|CALU_PONAB 121 274 + 154 Gaps:8 49.52 315 31.41 5e-10 Calumenin OS Pongo abelii GN CALU PE 2 SV 1
blastp_uniprot_sprot sp|O35887|CALU_MOUSE 121 274 + 154 Gaps:8 49.52 315 31.41 9e-10 Calumenin OS Mus musculus GN Calu PE 1 SV 1
blastp_uniprot_sprot sp|B5X4E0|CALUB_SALSA 121 312 + 192 Gaps:35 69.94 316 27.15 1e-09 Calumenin-B OS Salmo salar GN calub PE 2 SV 1
blastp_uniprot_sprot sp|Q3T0K1|CALU_BOVIN 121 274 + 154 Gaps:8 49.52 315 30.13 1e-09 Calumenin OS Bos taurus GN CALU PE 2 SV 1
blastp_uniprot_sprot sp|Q6IP82|CALU_XENLA 121 267 + 147 Gaps:8 47.30 315 31.54 2e-09 Calumenin OS Xenopus laevis GN calu PE 2 SV 1
blastp_uniprot_sprot sp|Q7SXV9|CALUB_DANRE 121 266 + 146 Gaps:8 46.98 315 30.41 3e-09 Calumenin-B OS Danio rerio GN calub PE 2 SV 1
blastp_uniprot_sprot sp|Q8BP92|RCN2_MOUSE 122 337 + 216 Gaps:25 65.94 320 29.38 6e-09 Reticulocalbin-2 OS Mus musculus GN Rcn2 PE 2 SV 1
rpsblast_kog gnl|CDD|39424 59 336 + 278 Gaps:31 84.00 325 34.07 9e-58 KOG4223 KOG4223 KOG4223 Reticulocalbin calumenin DNA supercoiling factor and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|39452 67 320 + 254 Gaps:30 73.48 362 22.56 3e-09 KOG4251 KOG4251 KOG4251 Calcium binding protein [General function prediction only].

25 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 155 180 26 PS50222 none EF-hand calcium-binding domain profile. IPR002048
ProSiteProfiles 241 271 31 PS50222 none EF-hand calcium-binding domain profile. IPR002048
Pfam 244 266 23 PF13833 none EF-hand domain pair none
PANTHER 16 336 321 PTHR10827:SF49 none none none
ProSiteProfiles 286 321 36 PS50222 none EF-hand calcium-binding domain profile. IPR002048
Gene3D 122 180 59 G3DSA:1.10.238.10 none none IPR011992
Gene3D 203 319 117 G3DSA:1.10.238.10 none none IPR011992
SUPERFAMILY 121 227 107 SSF47473 none none none
Pfam 205 225 21 PF13202 none EF hand IPR002048
Pfam 168 180 13 PF13202 none EF hand IPR002048
PANTHER 16 336 321 PTHR10827 none none none
ProSitePatterns 249 261 13 PS00018 none EF-hand calcium-binding domain. IPR018247
ProSitePatterns 210 222 13 PS00018 none EF-hand calcium-binding domain. IPR018247
SMART 159 190 32 SM00054 none EF-hand, calcium binding motif IPR002048
SMART 201 229 29 SM00054 none EF-hand, calcium binding motif IPR002048
SMART 240 268 29 SM00054 none EF-hand, calcium binding motif IPR002048
SMART 290 318 29 SM00054 none EF-hand, calcium binding motif IPR002048
ProSitePatterns 168 180 13 PS00018 none EF-hand calcium-binding domain. IPR018247
Phobius 25 339 315 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSitePatterns 299 311 13 PS00018 none EF-hand calcium-binding domain. IPR018247
SUPERFAMILY 204 333 130 SSF47473 none none none
ProSiteProfiles 203 232 30 PS50222 none EF-hand calcium-binding domain profile. IPR002048
Phobius 6 24 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 5 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 292 316 25 PF13405 none EF-hand domain IPR002048

1 Localization

Analysis Start End Length
TMHMM 5 24 19

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 25   Secretory pathway 2 0.823 0.128 NON-PLANT 25