Protein : Qrob_P0039860.2 Q. robur
Protein Identifier  ? Qrob_P0039860.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG0510//KOG4412 - Ankyrin repeat protein [General function prediction only]. // 26S proteasome regulatory complex subunit PSMD10 [Posttranslational modification protein turnover chaperones]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 181  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103337133 10 178 + 169 Gaps:34 50.93 697 49.30 9e-49 ankyrin-1-like
blastp_kegg lcl|cic:CICLE_v10024160mg 12 174 + 163 Gaps:23 86.41 206 50.56 3e-47 hypothetical protein
blastp_kegg lcl|tcc:TCM_042938 10 175 + 166 Gaps:14 36.66 491 51.11 3e-47 Ankyrin repeat family protein
blastp_kegg lcl|cic:CICLE_v10019837mg 12 171 + 160 Gaps:9 31.19 497 54.84 3e-47 hypothetical protein
blastp_kegg lcl|gmx:100777104 11 175 + 165 Gaps:13 42.79 416 47.75 9e-47 ankyrin repeat-containing protein At5g02620-like
blastp_kegg lcl|gmx:100776039 11 175 + 165 Gaps:13 30.53 583 47.75 1e-46 uncharacterized LOC100776039
blastp_kegg lcl|gmx:100781370 11 175 + 165 Gaps:13 41.11 433 47.19 4e-46 ankyrin repeat-containing protein At3g12360-like
blastp_kegg lcl|mtr:MTR_8g073260 12 172 + 161 Gaps:15 38.67 450 49.43 5e-46 Ankyrin repeat protein
blastp_kegg lcl|tcc:TCM_046873 12 175 + 164 Gaps:13 38.06 465 49.72 5e-46 Ankyrin repeat protein
blastp_kegg lcl|mtr:MTR_4g090050 12 174 + 163 Gaps:52 83.17 398 45.32 7e-46 Ankyrin repeat-containing protein
blastp_pdb 1n0r_A 24 175 + 152 Gaps:42 92.06 126 37.93 2e-07 mol:protein length:126 4 ankyrin repeats
blastp_uniprot_sprot sp|Q9ZU96|Y2168_ARATH 26 175 + 150 Gaps:25 28.38 532 32.45 1e-10 Ankyrin repeat-containing protein At2g01680 OS Arabidopsis thaliana GN At2g01680 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AWW5|Y5262_ARATH 26 171 + 146 Gaps:25 28.05 524 29.93 1e-08 Ankyrin repeat-containing protein At5g02620 OS Arabidopsis thaliana GN At5g02620 PE 1 SV 1
blastp_uniprot_sprot sp|Q8VHK2|CSKI1_RAT 24 111 + 88 Gaps:14 7.13 1430 33.33 6e-06 Caskin-1 OS Rattus norvegicus GN Caskin1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6P9K8|CSKI1_MOUSE 24 111 + 88 Gaps:14 7.13 1431 33.33 6e-06 Caskin-1 OS Mus musculus GN Caskin1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8WXD9|CSKI1_HUMAN 24 82 + 59 Gaps:7 4.61 1431 39.39 8e-06 Caskin-1 OS Homo sapiens GN CASKIN1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C7A2|Y3236_ARATH 26 118 + 93 Gaps:13 17.97 590 29.25 9e-06 Ankyrin repeat-containing protein At3g12360 OS Arabidopsis thaliana GN At3g12360 PE 2 SV 1
rpsblast_cdd gnl|CDD|29261 23 175 + 153 Gaps:36 92.86 126 32.48 6e-09 cd00204 ANK ankyrin repeats ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin repeats are stacked in a superhelical arrangement this alignment contains 4 consecutive repeats..
rpsblast_kog gnl|CDD|39613 24 180 + 157 Gaps:25 69.03 226 26.92 9e-09 KOG4412 KOG4412 KOG4412 26S proteasome regulatory complex subunit PSMD10 [Posttranslational modification protein turnover chaperones].
rpsblast_kog gnl|CDD|35730 17 177 + 161 Gaps:33 13.99 929 32.31 6e-07 KOG0510 KOG0510 KOG0510 Ankyrin repeat protein [General function prediction only].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 55 87 33 PS50088 none Ankyrin repeat profile. IPR002110
ProSiteProfiles 24 87 64 PS50297 none Ankyrin repeat region circular profile. IPR020683
SUPERFAMILY 22 171 150 SSF48403 none none IPR020683
Pfam 97 171 75 PF12796 none Ankyrin repeats (3 copies) IPR020683
Pfam 12 81 70 PF12796 none Ankyrin repeats (3 copies) IPR020683
SMART 21 50 30 SM00248 none ankyrin repeats IPR002110
SMART 55 84 30 SM00248 none ankyrin repeats IPR002110
SMART 110 139 30 SM00248 none ankyrin repeats IPR002110
PANTHER 12 172 161 PTHR24128 none none none
PANTHER 12 172 161 PTHR24128:SF13 none none none
Gene3D 23 172 150 G3DSA:1.25.40.20 none none IPR020683

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8

0 Targeting