Protein : Qrob_P0039820.2 Q. robur
Protein Identifier  ? Qrob_P0039820.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K18749 - protein LSM14 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 575  
Kegg Orthology  K18749
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Sequence Feature Displayer

Protein Sequence Displayer

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0 Synonyms

0 GO Terms

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0008s11390g 4 536 + 533 Gaps:70 92.78 637 64.30 0.0 POPTRDRAFT_820599 hypothetical protein
blastp_kegg lcl|tcc:TCM_011884 10 534 + 525 Gaps:41 82.02 673 69.57 0.0 Decapping 5
blastp_kegg lcl|vvi:100242198 22 533 + 512 Gaps:65 90.75 616 70.30 0.0 uncharacterized LOC100242198
blastp_kegg lcl|cam:101495322 22 536 + 515 Gaps:68 90.92 628 64.45 0.0 protein decapping 5-like
blastp_kegg lcl|pmum:103341419 11 534 + 524 Gaps:42 91.03 602 71.53 0.0 protein decapping 5
blastp_kegg lcl|pop:POPTR_0010s14130g 22 573 + 552 Gaps:69 96.36 632 64.04 0.0 POPTRDRAFT_1090999 hypothetical protein
blastp_kegg lcl|mtr:MTR_1g093860 22 536 + 515 Gaps:91 90.57 647 61.26 0.0 LSM14-like protein
blastp_kegg lcl|gmx:100782890 22 536 + 515 Gaps:59 91.48 610 65.59 0.0 protein decapping 5-like
blastp_kegg lcl|gmx:100808030 22 534 + 513 Gaps:54 90.42 616 65.17 0.0 protein decapping 5-like
blastp_kegg lcl|pvu:PHAVU_003G025600g 1 534 + 534 Gaps:50 92.28 609 66.19 0.0 hypothetical protein
blastp_pdb 2vxf_A 17 105 + 89 Gaps:6 87.37 95 62.65 9e-24 mol:protein length:95 LSM14A PROTEIN
blastp_pdb 2fb7_A 17 105 + 89 Gaps:6 87.37 95 62.65 9e-24 mol:protein length:95 Sm-like protein LSm-14_N (RAP55)
blastp_pdb 2vxe_A 23 93 + 71 Gaps:1 79.55 88 58.57 3e-18 mol:protein length:88 CG10686-PA
blastp_uniprot_sprot sp|Q9C658|DCP5_ARATH 10 536 + 527 Gaps:83 90.34 611 56.88 3e-173 Protein decapping 5 OS Arabidopsis thaliana GN DCP5 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FH77|DCP5L_ARATH 20 535 + 516 Gaps:94 85.81 571 36.94 2e-59 Decapping 5-like protein OS Arabidopsis thaliana GN DCP5-L PE 2 SV 1
blastp_uniprot_sprot sp|Q8CGC4|LS14B_MOUSE 15 151 + 137 Gaps:23 37.92 385 48.63 4e-25 Protein LSM14 homolog B OS Mus musculus GN Lsm14b PE 2 SV 3
blastp_uniprot_sprot sp|Q9BX40|LS14B_HUMAN 15 114 + 100 Gaps:3 25.19 385 58.76 9e-25 Protein LSM14 homolog B OS Homo sapiens GN LSM14B PE 1 SV 1
blastp_uniprot_sprot sp|Q8AVJ2|L14AB_XENLA 17 113 + 97 Gaps:3 19.96 471 59.57 1e-24 Protein LSM14 homolog A-B OS Xenopus laevis GN lsm14a-b PE 2 SV 1
blastp_uniprot_sprot sp|Q8ND56|LS14A_HUMAN 17 113 + 97 Gaps:3 20.30 463 59.57 1e-24 Protein LSM14 homolog A OS Homo sapiens GN LSM14A PE 1 SV 3
blastp_uniprot_sprot sp|Q5R4R4|LS14A_PONAB 17 113 + 97 Gaps:3 20.30 463 59.57 1e-24 Protein LSM14 homolog A OS Pongo abelii GN LSM14A PE 2 SV 1
blastp_uniprot_sprot sp|A0A8M2|L14AA_XENLA 17 113 + 97 Gaps:3 19.96 471 61.70 1e-24 Protein LSM14 homolog A-A OS Xenopus laevis GN lsm14a-a PE 1 SV 1
blastp_uniprot_sprot sp|Q3MHF8|LS14A_BOVIN 17 113 + 97 Gaps:3 20.30 463 59.57 2e-24 Protein LSM14 homolog A OS Bos taurus GN LSM14A PE 2 SV 1
blastp_uniprot_sprot sp|Q6NVR8|LS14A_XENTR 17 113 + 97 Gaps:3 20.04 469 59.57 2e-24 Protein LSM14 homolog A OS Xenopus tropicalis GN lsm14a PE 2 SV 1
rpsblast_cdd gnl|CDD|99773 19 92 + 74 none 100.00 74 68.92 1e-33 cd01736 LSm14_N LSm14 (also known as RAP55) belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing telomere replication and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain LSm14 has an uncharacterized C-terminal domain containing a conserved DFDF box. In Xenopus laevis LSm14 is an oocyte-specific constituent of ribonucleoprotein particles..
rpsblast_cdd gnl|CDD|205029 19 100 + 82 Gaps:1 100.00 81 67.90 3e-33 pfam12701 LSM14 Scd6-like Sm domain. The Scd6-like Sm domain is found in Scd6p from S. cerevisiae Rap55 from the newt Pleurodeles walt and its orthologs from fungi animals plants and apicomplexans. The domain is also found in Dcp3p and the human EDC3/FLJ21128 protein where it is fused to the the Rossmanoid YjeF-N domain. In addition both EDC3 and Scd6p are found fused to the FDF domain.
rpsblast_cdd gnl|CDD|204265 431 531 + 101 Gaps:9 96.00 100 30.21 3e-18 pfam09532 FDF FDF domain. The FDF domain so called because of the conserved FDF at its N termini is an entirely alpha-helical domain with multiple exposed hydrophilic loops. It is found at the C terminus of Scd6p-like SM domains. It is also found with other divergent Sm domains and in proteins such as Dcp3p and FLJ21128 where it is found N terminal to the YjeF-N domain a novel Rossmann fold domain.
rpsblast_cdd gnl|CDD|206604 21 95 + 75 Gaps:6 62.83 113 22.54 8e-07 pfam14438 SM-ATX SM domain found in Ataxin-2. SM domain found in Ataxin-2.
rpsblast_kog gnl|CDD|36290 17 416 + 400 Gaps:76 93.63 361 32.54 6e-31 KOG1073 KOG1073 KOG1073 Uncharacterized mRNA-associated protein RAP55 [Intracellular trafficking secretion and vesicular transport].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 492 507 16 PS51513 none FFD box profile. IPR025761
SUPERFAMILY 21 98 78 SSF50182 none none IPR010920
Pfam 19 115 97 PF12701 none Scd6-like Sm domain IPR025609
ProSiteProfiles 514 534 21 PS51536 none TFG box profile. IPR025768
PANTHER 408 567 160 PTHR13586 none none none
Pfam 431 531 101 PF09532 none FDF domain IPR019050
PANTHER 16 372 357 PTHR13586 none none none
PANTHER 408 567 160 PTHR13586:SF0 none none none
PANTHER 16 372 357 PTHR13586:SF0 none none none
ProSiteProfiles 424 460 37 PS51512 none DFDF domain profile. IPR025762

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8

0 Targeting