Protein : Qrob_P0039630.2 Q. robur
Protein Identifier  ? Qrob_P0039630.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=55) PF00646//PF07734 - F-box domain // F-box associated Gene Prediction Quality  validated
Protein length 

Sequence

Length: 424  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa024138mg 10 381 + 372 Gaps:33 98.22 394 42.38 1e-79 hypothetical protein
blastp_kegg lcl|pmum:103337284 10 381 + 372 Gaps:57 90.13 456 39.90 2e-77 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|pper:PRUPE_ppa021936mg 10 381 + 372 Gaps:38 98.21 391 40.89 3e-76 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa015105mg 10 381 + 372 Gaps:35 98.23 396 39.07 3e-74 hypothetical protein
blastp_kegg lcl|pmum:103325822 10 381 + 372 Gaps:35 89.63 434 39.33 8e-74 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|tcc:TCM_031361 9 397 + 389 Gaps:63 93.97 398 41.44 2e-72 F-box and associated interaction domains-containing protein putative isoform 1
blastp_kegg lcl|fve:101310034 12 383 + 372 Gaps:32 92.02 426 39.80 3e-72 F-box protein CPR30-like
blastp_kegg lcl|fve:101305451 8 381 + 374 Gaps:49 91.86 430 38.48 2e-69 F-box protein CPR30-like
blastp_kegg lcl|mdm:103429748 8 381 + 374 Gaps:43 98.76 402 38.04 4e-69 F-box protein CPR30-like
blastp_kegg lcl|pper:PRUPE_ppa016785mg 16 381 + 366 Gaps:46 98.99 396 38.27 4e-69 hypothetical protein
blastp_uniprot_sprot sp|Q9SU30|CPR30_ARATH 8 395 + 388 Gaps:68 94.43 413 27.95 6e-26 F-box protein CPR30 OS Arabidopsis thaliana GN CPR30 PE 1 SV 2
blastp_uniprot_sprot sp|Q8GXC7|FBK50_ARATH 11 375 + 365 Gaps:56 89.70 427 29.24 2e-21 F-box/kelch-repeat protein At3g06240 OS Arabidopsis thaliana GN At3g06240 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SUY0|FB244_ARATH 12 389 + 378 Gaps:62 93.53 402 26.86 2e-17 F-box protein At4g22390 OS Arabidopsis thaliana GN At4g22390 PE 2 SV 3
blastp_uniprot_sprot sp|Q9LX89|FB255_ARATH 11 317 + 307 Gaps:53 70.11 445 28.21 2e-14 F-box protein At5g10340 OS Arabidopsis thaliana GN At5g10340 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SFC7|FB135_ARATH 8 366 + 359 Gaps:81 89.69 417 27.27 2e-13 F-box protein At3g07870 OS Arabidopsis thaliana GN At3g07870 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SJ06|FB115_ARATH 1 337 + 337 Gaps:59 82.32 396 26.99 8e-13 F-box protein At2g21930 OS Arabidopsis thaliana GN At2g21930 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LPW2|FBK2_ARATH 10 319 + 310 Gaps:48 73.08 416 27.30 9e-12 Putative F-box/kelch-repeat protein At1g12870 OS Arabidopsis thaliana GN At1g12870 PE 4 SV 2
blastp_uniprot_sprot sp|Q9LIR8|FBK67_ARATH 10 308 + 299 Gaps:49 78.57 364 24.83 4e-11 F-box/kelch-repeat protein At3g23880 OS Arabidopsis thaliana GN At3g23880 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C800|FB34_ARATH 11 256 + 246 Gaps:49 50.11 441 32.58 1e-10 Putative F-box protein At1g33530 OS Arabidopsis thaliana GN At1g33530 PE 4 SV 1
blastp_uniprot_sprot sp|Q9CAE7|FB138_ARATH 10 268 + 259 Gaps:45 67.03 370 29.03 2e-10 Putative F-box protein At3g10430 OS Arabidopsis thaliana GN At3g10430 PE 4 SV 1
rpsblast_cdd gnl|CDD|162458 124 352 + 229 Gaps:39 100.00 230 23.04 2e-14 TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646) a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 11 51 41 SM00256 none A Receptor for Ubiquitination Targets IPR001810
Phobius 1 397 397 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 7 46 40 PF00646 none F-box domain IPR001810
SUPERFAMILY 6 57 52 SSF81383 none none IPR001810
ProSiteProfiles 5 51 47 PS50181 none F-box domain profile. IPR001810
Pfam 219 316 98 PF07734 none F-box associated IPR006527
Phobius 418 423 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 2 378 377 PTHR31790 none none none
Phobius 398 417 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 7 47 41 G3DSA:1.20.1280.50 none none none
PANTHER 2 378 377 PTHR31790:SF2 none none none
TIGRFAM 130 340 211 TIGR01640 none F_box_assoc_1: F-box protein interaction domain IPR017451

1 Localization

Analysis Start End Length
TMHMM 396 418 22

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8

0 Targeting