Protein : Qrob_P0039610.2 Q. robur
Protein Identifier  ? Qrob_P0039610.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) K03655 - ATP-dependent DNA helicase RecG [EC:3.6.4.12] Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 422  
Kegg Orthology  K03655
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0 Synonyms

0 GO Terms

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa001035mg 1 394 + 394 Gaps:83 42.93 927 73.12 3e-123 hypothetical protein
blastp_kegg lcl|pmum:103341595 1 394 + 394 Gaps:83 41.48 962 72.93 4e-123 uncharacterized LOC103341595
blastp_kegg lcl|pop:POPTR_0010s12280g 1 394 + 394 Gaps:83 44.03 888 74.17 5e-123 POPTRDRAFT_726887 ATP-dependent DNA helicase family protein
blastp_kegg lcl|mtr:MTR_1g031120 7 291 + 285 Gaps:24 67.36 432 66.32 4e-122 ATP-dependent DNA helicase recG
blastp_kegg lcl|mtr:MTR_3g079900 7 291 + 285 Gaps:24 68.96 422 66.32 7e-122 ATP-dependent DNA helicase recG
blastp_kegg lcl|cic:CICLE_v10017747mg 1 394 + 394 Gaps:81 42.45 874 75.74 2e-121 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_003G032900g 10 394 + 385 Gaps:81 64.64 560 74.03 1e-120 hypothetical protein
blastp_kegg lcl|cit:102606824 1 394 + 394 Gaps:81 38.53 963 75.74 2e-120 uncharacterized LOC102606824
blastp_kegg lcl|mdm:103402596 1 394 + 394 Gaps:83 38.84 999 73.20 4e-120 uncharacterized LOC103402596
blastp_kegg lcl|pxb:103948642 1 394 + 394 Gaps:83 41.95 925 72.68 1e-119 uncharacterized LOC103948642
blastp_pdb 1gm5_A 21 394 + 374 Gaps:78 44.62 780 38.51 1e-32 mol:protein length:780 RECG
blastp_pdb 2eyq_B 20 268 + 249 Gaps:80 18.85 1151 34.10 3e-17 mol:protein length:1151 Transcription-repair coupling factor
blastp_pdb 2eyq_A 20 268 + 249 Gaps:80 18.85 1151 34.10 3e-17 mol:protein length:1151 Transcription-repair coupling factor
blastp_uniprot_sprot sp|Q55681|RECG_SYNY3 10 394 + 385 Gaps:78 41.16 831 44.74 1e-44 ATP-dependent DNA helicase RecG OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN recG PE 3 SV 1
blastp_uniprot_sprot sp|O34942|RECG_BACSU 18 394 + 377 Gaps:85 49.41 682 37.39 2e-36 ATP-dependent DNA helicase RecG OS Bacillus subtilis (strain 168) GN recG PE 3 SV 1
blastp_uniprot_sprot sp|Q54900|RECG_STRPN 11 294 + 284 Gaps:67 37.41 671 39.04 3e-36 ATP-dependent DNA helicase RecG OS Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN recG PE 3 SV 2
blastp_uniprot_sprot sp|Q5HGK6|RECG_STAAC 19 394 + 376 Gaps:73 48.98 686 36.90 7e-35 ATP-dependent DNA helicase RecG OS Staphylococcus aureus (strain COL) GN recG PE 3 SV 1
blastp_uniprot_sprot sp|O50581|RECG_STAA8 19 394 + 376 Gaps:73 48.98 686 36.90 7e-35 ATP-dependent DNA helicase RecG OS Staphylococcus aureus (strain NCTC 8325) GN recG PE 3 SV 1
blastp_uniprot_sprot sp|Q8NX11|RECG_STAAW 19 394 + 376 Gaps:73 48.98 686 37.20 1e-34 ATP-dependent DNA helicase RecG OS Staphylococcus aureus (strain MW2) GN recG PE 3 SV 1
blastp_uniprot_sprot sp|Q6G9Y6|RECG_STAAS 19 394 + 376 Gaps:73 48.98 686 37.20 1e-34 ATP-dependent DNA helicase RecG OS Staphylococcus aureus (strain MSSA476) GN recG PE 3 SV 1
blastp_uniprot_sprot sp|P64325|RECG_STAAN 19 394 + 376 Gaps:73 48.98 686 37.20 1e-34 ATP-dependent DNA helicase RecG OS Staphylococcus aureus (strain N315) GN recG PE 1 SV 1
blastp_uniprot_sprot sp|P64324|RECG_STAAM 19 394 + 376 Gaps:73 48.98 686 37.20 1e-34 ATP-dependent DNA helicase RecG OS Staphylococcus aureus (strain Mu50 / ATCC 700699) GN recG PE 1 SV 1
blastp_uniprot_sprot sp|Q6GHK8|RECG_STAAR 19 394 + 376 Gaps:73 48.98 686 37.20 1e-34 ATP-dependent DNA helicase RecG OS Staphylococcus aureus (strain MRSA252) GN recG PE 3 SV 1
rpsblast_cdd gnl|CDD|161975 10 394 + 385 Gaps:79 54.76 630 46.38 2e-75 TIGR00643 recG ATP-dependent DNA helicase RecG.
rpsblast_cdd gnl|CDD|182836 10 394 + 385 Gaps:83 52.42 681 42.58 4e-68 PRK10917 PRK10917 ATP-dependent DNA helicase RecG Provisional.
rpsblast_cdd gnl|CDD|31393 10 394 + 385 Gaps:79 53.91 677 40.82 8e-60 COG1200 RecG RecG-like helicase [DNA replication recombination and repair / Transcription].
rpsblast_cdd gnl|CDD|161938 19 268 + 250 Gaps:80 23.54 926 36.24 7e-30 TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis Stanford University). This family is closely related to the RecG and UvrB families.
rpsblast_cdd gnl|CDD|31390 19 268 + 250 Gaps:84 19.14 1139 34.86 2e-29 COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication recombination and repair / Transcription].
rpsblast_cdd gnl|CDD|182649 20 268 + 249 Gaps:100 18.92 1147 36.41 1e-17 PRK10689 PRK10689 transcription-repair coupling factor Provisional.
rpsblast_cdd gnl|CDD|201125 156 224 + 69 Gaps:1 87.18 78 27.94 7e-10 pfam00271 Helicase_C Helicase conserved C-terminal domain. The Prosite family is restricted to DEAD/H helicases whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit but an integral part of the helicase.

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 421 421 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 395 420 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 107 261 155 G3DSA:3.40.50.300 none none IPR027417
SMART 148 226 79 SM00490 none helicase superfamily c-terminal domain IPR001650
PANTHER 17 35 19 PTHR24031:SF50 none none none
Phobius 1 394 394 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 17 35 19 PTHR24031 none none none
PANTHER 91 223 133 PTHR24031 none none none
SUPERFAMILY 107 268 162 SSF52540 none none IPR027417
ProSiteProfiles 113 277 165 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
Pfam 157 212 56 PF00271 none Helicase conserved C-terminal domain IPR001650
PANTHER 91 223 133 PTHR24031:SF50 none none none

1 Localization

Analysis Start End Length
TMHMM 393 415 22

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8

0 Targeting