Protein : Qrob_P0039490.2 Q. robur
Protein Identifier  ? Qrob_P0039490.2 Organism . Name  Quercus robur
Score  94.2 Score Type  egn
Protein Description  (M=2) K11883 - RNA-binding protein NOB1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 610  
Kegg Orthology  K11883
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0000469 cleavage involved in rRNA processing Any phosphodiester bond hydrolysis involved in the conversion of a primary ribosomal RNA (rRNA) transcript into a mature rRNA molecule.
GO:0004521 endoribonuclease activity Catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks.
GO:0042274 ribosomal small subunit biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a small ribosomal subunit; includes transport to the sites of protein synthesis.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_016231 1 609 + 609 Gaps:57 99.84 611 67.54 0.0 RNA-binding protein nob1 putative isoform 1
blastp_kegg lcl|pmum:103337478 4 605 + 602 Gaps:58 96.45 647 64.10 0.0 RNA-binding protein NOB1
blastp_kegg lcl|pper:PRUPE_ppa016934mg 4 605 + 602 Gaps:63 95.88 656 62.80 0.0 hypothetical protein
blastp_kegg lcl|cit:102614044 11 609 + 599 Gaps:56 99.53 632 60.73 0.0 RNA-binding protein NOB1-like
blastp_kegg lcl|vvi:100258154 12 608 + 597 Gaps:59 99.21 633 61.62 0.0 RNA-binding protein NOB1-like
blastp_kegg lcl|csv:101221544 11 609 + 599 Gaps:69 99.51 617 62.38 0.0 RNA-binding protein NOB1-like
blastp_kegg lcl|csv:101226071 11 609 + 599 Gaps:69 99.51 617 62.38 0.0 RNA-binding protein NOB1-like
blastp_kegg lcl|fve:101295525 10 609 + 600 Gaps:70 97.78 630 62.01 0.0 uncharacterized protein LOC101295525
blastp_kegg lcl|cmo:103482733 11 609 + 599 Gaps:67 99.51 615 62.58 0.0 RNA-binding protein NOB1
blastp_kegg lcl|rcu:RCOM_1686350 41 609 + 569 Gaps:52 93.79 628 64.86 0.0 RNA-binding protein nob1 putative
blastp_pdb 2con_A 455 516 + 62 Gaps:3 79.75 79 36.51 9e-08 mol:protein length:79 nin one binding protein
blastp_pdb 2lcq_A 59 150 + 92 Gaps:7 52.73 165 31.03 7e-06 mol:protein length:165 Putative toxin VapC6
blastp_uniprot_sprot sp|Q5RBB3|NOB1_PONAB 59 565 + 507 Gaps:9 63.02 411 41.70 8e-27 RNA-binding protein NOB1 OS Pongo abelii GN NOB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q3T042|NOB1_BOVIN 59 570 + 512 Gaps:14 62.71 413 41.70 8e-27 RNA-binding protein NOB1 OS Bos taurus GN NOB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6VEU1|NOB1_RAT 59 560 + 502 Gaps:12 64.63 410 40.75 1e-26 RNA-binding protein NOB1 OS Rattus norvegicus GN Nob1 PE 2 SV 1
blastp_uniprot_sprot sp|Q4R537|NOB1_MACFA 59 560 + 502 Gaps:12 64.08 412 41.29 1e-26 RNA-binding protein NOB1 OS Macaca fascicularis GN NOB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ULX3|NOB1_HUMAN 59 565 + 507 Gaps:9 62.62 412 41.47 2e-26 RNA-binding protein NOB1 OS Homo sapiens GN NOB1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8BW10|NOB1_MOUSE 59 570 + 512 Gaps:16 68.49 403 40.22 6e-26 RNA-binding protein NOB1 OS Mus musculus GN Nob1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9UTK0|NOB1_SCHPO 52 601 + 550 Gaps:32 77.32 388 36.00 1e-25 20S-pre-rRNA D-site endonuclease nob1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN nob1 PE 3 SV 1
blastp_uniprot_sprot sp|Q08444|NOB1_YEAST 50 545 + 496 Gaps:24 65.80 459 30.46 5e-11 20S-pre-rRNA D-site endonuclease NOB1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN NOB1 PE 1 SV 1
rpsblast_cdd gnl|CDD|189046 59 165 + 107 Gaps:2 96.33 109 45.71 4e-33 cd09876 PIN_Nob1 PIN domain of eukaryotic ribosome assembly factor Nob1 and archaeal UPF0129 protein Ta0041-like homologs. PIN (PilT N terminus) domain of the Saccharomyces cerevisiae ribosome assembly factor Nob1 (Nin one binding) protein the Thermoplasma acidophilum DSM 1728 UPF0129 protein Ta0041 and similar eukaryotic and archaeal homologs are included in this family. The Nob1 PIN domain binds the single-stranded cleavage site D at the 3#end of 18S rRNA. Recombinant Nob1 binds as a tetramer to pre-18S rRNA fragments containing cleavage site D and believed to cleave at this site. These PIN domains are homologs of flap endonuclease-1 (FEN1)-like PIN domains but lack the extensive arch/clamp region and the H3TH (helix-3-turn-helix) domain an atypical helix-hairpin-helix-2-like region seen in FEN1-like PIN domains. PIN domains within this subgroup contain three highly conserved acidic residues (putative metal-binding active site residues).
rpsblast_cdd gnl|CDD|192150 460 531 + 72 Gaps:3 100.00 73 46.58 5e-23 pfam08772 NOB1_Zn_bind Nin one binding (NOB1) Zn-ribbon like. This domain corresponds to a zinc ribbon and is found on the RNA binding protein NOB1 (Nin one binding).
rpsblast_cdd gnl|CDD|183559 59 150 + 92 Gaps:4 54.88 164 36.67 7e-13 PRK12496 PRK12496 hypothetical protein Provisional.
rpsblast_cdd gnl|CDD|31628 59 499 + 441 Gaps:5 89.83 177 35.85 3e-10 COG1439 COG1439 Predicted nucleic acid-binding protein consists of a PIN domain and a Zn-ribbon module [General function prediction only].
rpsblast_kog gnl|CDD|37674 52 607 + 556 Gaps:21 99.73 376 36.53 4e-47 KOG2463 KOG2463 KOG2463 Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification protein turnover chaperones].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PIRSF 38 609 572 PIRSF037125 none none IPR017117
SUPERFAMILY 461 524 64 SSF144206 none none IPR014881
PANTHER 427 609 183 PTHR12814 none none none
PANTHER 8 241 234 PTHR12814 none none none
PANTHER 296 404 109 PTHR12814 none none none
Pfam 460 531 72 PF08772 none Nin one binding (NOB1) Zn-ribbon like IPR014881

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8

0 Targeting