Protein : Qrob_P0039360.2 Q. robur
Protein Identifier  ? Qrob_P0039360.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=16) PF01476 - LysM domain Code Enzyme  EC:2.7.11.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 261  
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0 Synonyms

0 GO Terms

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100258108 6 244 + 239 Gaps:6 35.94 665 53.97 4e-76 wall-associated receptor kinase-like 2-like
blastp_kegg lcl|pda:103701426 6 238 + 233 Gaps:4 37.09 639 52.74 1e-75 protein LYK5-like
blastp_kegg lcl|rcu:RCOM_1602540 13 240 + 228 Gaps:8 37.22 634 54.66 8e-74 kinase putative (EC:2.7.10.1)
blastp_kegg lcl|pmum:103336594 25 238 + 214 Gaps:2 32.34 668 53.70 1e-72 protein LYK5
blastp_kegg lcl|pda:103701565 6 238 + 233 Gaps:3 66.11 357 50.42 2e-72 protein LYK5-like
blastp_kegg lcl|tcc:TCM_040951 10 236 + 227 Gaps:1 31.89 715 48.68 9e-72 Kinase Peptidoglycan-binding LysM putative
blastp_kegg lcl|rcu:RCOM_1014860 25 240 + 216 Gaps:5 35.42 624 52.04 2e-71 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor putative (EC:2.7.10.1)
blastp_kegg lcl|atr:s00022p00063910 13 239 + 227 Gaps:1 35.08 650 47.81 9e-71 AMTR_s00022p00063910 hypothetical protein
blastp_kegg lcl|pop:POPTR_0005s28080g 25 240 + 216 Gaps:7 34.10 654 52.91 2e-70 POPTRDRAFT_862283 kinase family protein
blastp_kegg lcl|cic:CICLE_v10011219mg 1 236 + 236 Gaps:4 35.24 681 48.75 5e-70 hypothetical protein
blastp_uniprot_sprot sp|O22808|LYK5_ARATH 1 241 + 241 Gaps:11 37.35 664 46.77 5e-60 Protein LYK5 OS Arabidopsis thaliana GN LYK5 PE 1 SV 1
blastp_uniprot_sprot sp|O64825|LYK4_ARATH 12 237 + 226 Gaps:4 37.58 612 39.57 9e-52 LysM domain receptor-like kinase 4 OS Arabidopsis thaliana GN LYK4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SGI7|LYK2_ARATH 47 237 + 191 Gaps:21 26.91 654 31.25 4e-16 Protein LYK2 OS Arabidopsis thaliana GN LYK2 PE 2 SV 1
blastp_uniprot_sprot sp|Q93ZH0|LYM1_ARATH 72 228 + 157 Gaps:14 38.22 416 29.56 1e-07 LysM domain-containing GPI-anchored protein 1 OS Arabidopsis thaliana GN LYM1 PE 1 SV 1
blastp_uniprot_sprot sp|A8R7E6|CERK1_ARATH 90 201 + 112 Gaps:2 18.15 617 26.79 7e-07 Chitin elicitor receptor kinase 1 OS Arabidopsis thaliana GN CERK1 PE 1 SV 1
blastp_uniprot_sprot sp|O23006|LYM2_ARATH 44 250 + 207 Gaps:23 61.71 350 25.00 2e-06 LysM domain-containing GPI-anchored protein 2 OS Arabidopsis thaliana GN LYM2 PE 1 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 20 26 7 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 26 26 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 1 8 8 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SMART 188 232 45 SM00257 none Lysin motif IPR018392
SUPERFAMILY 188 232 45 SSF54106 none none IPR018392
Phobius 9 19 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Pfam 191 232 42 PF01476 none LysM domain IPR018392
Phobius 27 260 234 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 189 232 44 G3DSA:3.10.350.10 none none IPR018392

3 Localization

Analysis Start End Length
SignalP_GRAM_NEGATIVE 1 26 25
SignalP_EUK 1 26 25
SignalP_GRAM_POSITIVE 1 26 25

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 26   Secretory pathway 2 0.934 0.011 NON-PLANT 26