Protein : Qrob_P0039230.2 Q. robur
Protein Identifier  ? Qrob_P0039230.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=5) PTHR31636:SF13 - SCARECROW-LIKE PROTEIN 3 (PTHR31636:SF13) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 470  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0000989 transcription factor binding transcription factor activity Interacting selectively and non-covalently with a specific transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100258442 4 465 + 462 Gaps:9 98.12 478 73.77 0.0 scarecrow-like protein 3
blastp_kegg lcl|pop:POPTR_0003s20100g 4 465 + 462 Gaps:9 98.11 476 72.81 0.0 POPTRDRAFT_554998 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s06090g 3 465 + 463 Gaps:8 98.11 476 72.59 0.0 POPTRDRAFT_797106 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1453680 4 465 + 462 Gaps:10 98.73 474 72.65 0.0 transcription factor putative
blastp_kegg lcl|tcc:TCM_042392 4 467 + 464 Gaps:14 98.96 483 72.59 0.0 Scarecrow-like protein 3 isoform 1
blastp_kegg lcl|cic:CICLE_v10031389mg 4 465 + 462 Gaps:11 98.12 480 70.91 0.0 hypothetical protein
blastp_kegg lcl|cit:102620574 4 465 + 462 Gaps:11 98.12 480 70.91 0.0 scarecrow-like protein 3-like
blastp_kegg lcl|fve:101293107 4 465 + 462 Gaps:6 98.72 470 69.83 0.0 scarecrow-like protein 3-like
blastp_kegg lcl|pmum:103343813 4 465 + 462 Gaps:9 98.70 461 72.31 0.0 scarecrow-like protein 3
blastp_kegg lcl|pmum:103330618 4 465 + 462 Gaps:9 98.70 461 72.31 0.0 scarecrow-like protein 3
blastp_uniprot_sprot sp|Q9LPR8|SCL3_ARATH 1 465 + 465 Gaps:15 99.17 482 58.37 0.0 Scarecrow-like protein 3 OS Arabidopsis thaliana GN SCL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ST48|DWRF8_MAIZE 7 465 + 459 Gaps:85 66.98 630 33.65 3e-59 DELLA protein DWARF8 OS Zea mays GN D8 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C8Y3|RGL1_ARATH 38 465 + 428 Gaps:68 71.23 511 36.26 1e-58 DELLA protein RGL1 OS Arabidopsis thaliana GN RGL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8GVE1|CIGR2_ORYSJ 31 464 + 434 Gaps:62 70.59 544 36.46 6e-58 Chitin-inducible gibberellin-responsive protein 2 OS Oryza sativa subsp. japonica GN CIGR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8H125|SCL5_ARATH 50 465 + 416 Gaps:60 61.64 597 35.87 2e-57 Scarecrow-like protein 5 OS Arabidopsis thaliana GN SCL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M384|SCR_ARATH 35 464 + 430 Gaps:62 56.97 653 35.75 2e-56 Protein SCARECROW OS Arabidopsis thaliana GN SCR PE 1 SV 1
blastp_uniprot_sprot sp|Q9LDL7|PAT1_ARATH 51 465 + 415 Gaps:61 75.10 490 34.51 1e-55 Scarecrow-like transcription factor PAT1 OS Arabidopsis thaliana GN PAT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8W127|SLN1_HORVU 40 465 + 426 Gaps:88 63.43 618 33.16 3e-55 DELLA protein SLN1 OS Hordeum vulgare GN SLN1 PE 1 SV 1
blastp_uniprot_sprot sp|Q7G7J6|SLR1_ORYSJ 40 465 + 426 Gaps:86 62.08 625 34.02 3e-54 DELLA protein SLR1 OS Oryza sativa subsp. japonica GN SLR1 PE 1 SV 1
blastp_uniprot_sprot sp|Q2Z2E9|SCR_IPONI 41 465 + 425 Gaps:62 46.87 783 35.42 1e-53 Protein SCARECROW OS Ipomoea nil GN SCR PE 1 SV 1
rpsblast_cdd gnl|CDD|202673 47 465 + 419 Gaps:61 100.00 372 45.70 1e-107 pfam03514 GRAS GRAS family transcription factor. Sequence analysis of the products of the GRAS (GAI RGA SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect loss of a ground tissue layer in the root. The PAT1 protein is involved in phytochrome A signal transduction.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 315 469 155 PTHR31636 none none none
PANTHER 1 265 265 PTHR31636 none none none
PANTHER 315 469 155 PTHR31636:SF13 none none IPR030008
PANTHER 1 265 265 PTHR31636:SF13 none none IPR030008
Pfam 47 465 419 PF03514 none GRAS domain family IPR005202
ProSiteProfiles 21 445 425 PS50985 none GRAS family profile. IPR005202

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4

0 Targeting