Protein : Qrob_P0039220.2 Q. robur
Protein Identifier  ? Qrob_P0039220.2 Organism . Name  Quercus robur
Score  92.4 Score Type  egn
Protein Description  (M=5) PTHR31636:SF13 - SCARECROW-LIKE PROTEIN 3 (PTHR31636:SF13) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 447  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0000989 transcription factor binding transcription factor activity Interacting selectively and non-covalently with a specific transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100258442 5 400 + 396 Gaps:29 88.91 478 64.94 0.0 scarecrow-like protein 3
blastp_kegg lcl|pop:POPTR_0003s20100g 4 402 + 399 Gaps:29 89.50 476 61.27 8e-176 POPTRDRAFT_554998 hypothetical protein
blastp_kegg lcl|tcc:TCM_042392 1 402 + 402 Gaps:35 90.48 483 63.84 8e-175 Scarecrow-like protein 3 isoform 1
blastp_kegg lcl|rcu:RCOM_1453680 4 402 + 399 Gaps:30 90.08 474 63.23 2e-174 transcription factor putative
blastp_kegg lcl|pop:POPTR_0001s06090g 4 402 + 399 Gaps:29 89.50 476 61.50 1e-173 POPTRDRAFT_797106 hypothetical protein
blastp_kegg lcl|pmum:103343813 6 402 + 397 Gaps:22 90.02 461 62.89 1e-169 scarecrow-like protein 3
blastp_kegg lcl|pmum:103330618 6 402 + 397 Gaps:22 90.02 461 62.89 1e-169 scarecrow-like protein 3
blastp_kegg lcl|pper:PRUPE_ppa005439mg 6 402 + 397 Gaps:22 90.02 461 62.89 1e-169 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10031389mg 5 402 + 398 Gaps:33 89.38 480 62.00 1e-169 hypothetical protein
blastp_kegg lcl|cit:102620574 5 402 + 398 Gaps:33 89.38 480 61.77 5e-169 scarecrow-like protein 3-like
blastp_uniprot_sprot sp|Q9LPR8|SCL3_ARATH 24 402 + 379 Gaps:23 83.40 482 51.74 1e-131 Scarecrow-like protein 3 OS Arabidopsis thaliana GN SCL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8S4W7|GAI1_VITVI 34 396 + 363 Gaps:56 54.41 590 37.69 7e-54 DELLA protein GAI1 OS Vitis vinifera GN GAI1 PE 2 SV 1
blastp_uniprot_sprot sp|Q84TQ7|GAI_GOSHI 33 396 + 364 Gaps:61 60.15 537 37.46 3e-51 DELLA protein GAI OS Gossypium hirsutum GN GAI PE 2 SV 1
blastp_uniprot_sprot sp|Q9C8Y3|RGL1_ARATH 33 396 + 364 Gaps:53 61.64 511 35.87 8e-51 DELLA protein RGL1 OS Arabidopsis thaliana GN RGL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LDL7|PAT1_ARATH 45 399 + 355 Gaps:42 66.33 490 32.62 3e-49 Scarecrow-like transcription factor PAT1 OS Arabidopsis thaliana GN PAT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ST48|DWRF8_MAIZE 34 396 + 363 Gaps:67 53.97 630 33.82 1e-48 DELLA protein DWARF8 OS Zea mays GN D8 PE 1 SV 1
blastp_uniprot_sprot sp|Q8GVE1|CIGR2_ORYSJ 25 399 + 375 Gaps:45 62.87 544 32.75 2e-48 Chitin-inducible gibberellin-responsive protein 2 OS Oryza sativa subsp. japonica GN CIGR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9S7H5|SCL21_ARATH 37 399 + 363 Gaps:40 78.21 413 34.67 5e-48 Scarecrow-like protein 21 OS Arabidopsis thaliana GN SCL21 PE 1 SV 1
blastp_uniprot_sprot sp|Q8GXW1|RGL2_ARATH 33 396 + 364 Gaps:50 59.60 547 33.44 5e-48 DELLA protein RGL2 OS Arabidopsis thaliana GN RGL2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LF53|RGL3_ARATH 27 396 + 370 Gaps:61 64.05 523 34.93 2e-47 DELLA protein RGL3 OS Arabidopsis thaliana GN RGL3 PE 1 SV 1
rpsblast_cdd gnl|CDD|202673 41 411 + 371 Gaps:46 91.67 372 42.82 1e-84 pfam03514 GRAS GRAS family transcription factor. Sequence analysis of the products of the GRAS (GAI RGA SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect loss of a ground tissue layer in the root. The PAT1 protein is involved in phytochrome A signal transduction.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 293 402 110 PTHR31636:SF13 none none IPR030008
Pfam 41 404 364 PF03514 none GRAS domain family IPR005202
ProSiteProfiles 15 423 409 PS50985 none GRAS family profile. IPR005202
PANTHER 24 263 240 PTHR31636 none none none
PANTHER 293 402 110 PTHR31636 none none none
PANTHER 24 263 240 PTHR31636:SF13 none none IPR030008

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4

0 Targeting