Protein : Qrob_P0038920.2 Q. robur
Protein Identifier  ? Qrob_P0038920.2 Organism . Name  Quercus robur
Score  45.9 Score Type  egn
Protein Description  (M=53) PF00954//PF01453//PF08276 - S-locus glycoprotein family // D-mannose binding lectin // PAN-like domain Code Enzyme  EC:2.7.11.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 495  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0048544 recognition of pollen The process, involving the sharing and interaction of the single locus incompatibility haplotypes, involved in the recognition or rejection of the self pollen by cells in the stigma. This process ensures out-breeding in certain plant species.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_031233 1 461 + 461 Gaps:12 43.39 1044 55.41 5e-169 S-locus lectin protein kinase family protein
blastp_kegg lcl|tcc:TCM_031409 1 468 + 468 Gaps:14 55.95 815 52.19 8e-165 S-locus lectin protein kinase family protein isoform 1
blastp_kegg lcl|pop:POPTR_0001s42340g 3 468 + 466 Gaps:13 64.46 709 52.08 4e-161 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_005G088700g 1 468 + 468 Gaps:10 56.17 819 50.65 5e-160 hypothetical protein
blastp_kegg lcl|pxb:103946546 1 490 + 490 Gaps:15 58.55 825 49.07 9e-160 G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
blastp_kegg lcl|pmum:103326307 6 446 + 441 Gaps:16 52.88 815 56.61 1e-159 G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
blastp_kegg lcl|mdm:103423008 1 468 + 468 Gaps:14 56.86 809 50.87 1e-159 G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
blastp_kegg lcl|pop:POPTR_0001s44380g 22 468 + 447 Gaps:11 54.05 814 54.32 3e-159 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s43850g 7 481 + 475 Gaps:21 57.14 819 51.71 4e-159 hypothetical protein
blastp_kegg lcl|tcc:TCM_031414 1 468 + 468 Gaps:14 55.88 816 50.88 1e-158 S-locus lectin protein kinase family protein
blastp_uniprot_sprot sp|O81832|Y4729_ARATH 14 444 + 431 Gaps:18 54.28 783 42.82 5e-109 G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS Arabidopsis thaliana GN At4g27290 PE 3 SV 4
blastp_uniprot_sprot sp|O81905|SD18_ARATH 21 472 + 452 Gaps:14 52.24 850 40.77 7e-104 Receptor-like serine/threonine-protein kinase SD1-8 OS Arabidopsis thaliana GN SD18 PE 1 SV 1
blastp_uniprot_sprot sp|P07761|SLSG6_BRAOL 12 433 + 422 Gaps:20 96.33 436 41.19 5e-103 S-locus-specific glycoprotein S6 OS Brassica oleracea GN SLSG PE 2 SV 2
blastp_uniprot_sprot sp|P17840|SLSG3_BRAOL 12 433 + 422 Gaps:19 96.32 435 40.57 2e-102 S-locus-specific glycoprotein S13 OS Brassica oleracea GN SLSG PE 2 SV 2
blastp_uniprot_sprot sp|Q09092|SRK6_BRAOE 7 481 + 475 Gaps:17 54.38 857 37.98 1e-99 Putative serine/threonine-protein kinase receptor OS Brassica oleracea var. acephala GN SRK6 PE 2 SV 2
blastp_uniprot_sprot sp|P22553|SLSG2_BRAOA 11 433 + 423 Gaps:20 96.78 435 40.38 3e-98 S-locus-specific glycoprotein BS29-2 OS Brassica oleracea var. alboglabra GN SLSG PE 2 SV 1
blastp_uniprot_sprot sp|Q39086|SD17_ARATH 20 478 + 459 Gaps:18 53.02 843 37.58 4e-90 Receptor-like serine/threonine-protein kinase SD1-7 OS Arabidopsis thaliana GN SD17 PE 1 SV 1
blastp_uniprot_sprot sp|P0DH87|PSRK_ARATH 20 478 + 459 Gaps:23 82.05 546 37.72 8e-89 Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK OS Arabidopsis thaliana GN PSEUDOSRKA PE 5 SV 1
blastp_uniprot_sprot sp|P0DH86|SRK_ARATH 20 476 + 457 Gaps:23 52.29 853 38.12 2e-87 G-type lectin S-receptor-like serine/threonine-protein kinase SRK OS Arabidopsis thaliana GN SRK PE 2 SV 1
blastp_uniprot_sprot sp|Q9S972|SD16_ARATH 24 478 + 455 Gaps:16 52.77 847 37.58 2e-87 Receptor-like serine/threonine-protein kinase SD1-6 OS Arabidopsis thaliana GN SD16 PE 1 SV 2
rpsblast_cdd gnl|CDD|201803 72 185 + 114 Gaps:5 100.00 109 52.29 1e-30 pfam01453 B_lectin D-mannose binding lectin. These proteins include mannose-specific lectins from plants as well as bacteriocins from bacteria.
rpsblast_cdd gnl|CDD|201524 211 320 + 110 Gaps:2 100.00 110 39.09 6e-28 pfam00954 S_locus_glycop S-locus glycoprotein family. In Brassicaceae self-incompatible plants have a self/non-self recognition system. This is sporophytically controlled by multiple alleles at a single locus (S). S-locus glycoproteins as well as S-receptor kinases are in linkage with the S-alleles.
rpsblast_cdd gnl|CDD|128418 36 152 + 117 Gaps:7 96.49 114 48.18 1e-23 smart00108 B_lectin Bulb-type mannose-specific lectin.
rpsblast_cdd gnl|CDD|28910 36 153 + 118 Gaps:6 96.55 116 48.21 3e-23 cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes such as cell-cell and host-pathogen interactions serum glycoprotein turnover and innate immune responses..
rpsblast_cdd gnl|CDD|203897 341 409 + 69 Gaps:3 100.00 66 42.42 2e-17 pfam08276 PAN_2 PAN-like domain.
rpsblast_cdd gnl|CDD|29032 337 430 + 94 Gaps:12 100.00 84 38.10 1e-12 cd01098 PAN_AP_plant Plant PAN/APPLE-like domain present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica one of probably many molecular mechanisms by which hermaphrodite flowering plants avoid self-fertilization..

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 72 185 114 PF01453 none D-mannose binding lectin IPR001480
Phobius 20 23 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 1 480 480 PTHR11795 none none none
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PIRSF 6 445 440 PIRSF002686 none none none
Phobius 444 465 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 344 409 66 PF08276 none PAN-like domain IPR013227
Pfam 211 319 109 PF00954 none S-locus glycoprotein family IPR000858
PANTHER 1 480 480 PTHR11795:SF367 none none IPR024179
Phobius 1 23 23 SIGNAL_PEPTIDE none Signal peptide region none
ProSiteProfiles 24 147 124 PS50927 none Bulb-type lectin domain profile. IPR001480
ProSiteProfiles 286 322 37 PS50026 none EGF-like domain profile. IPR000742
Phobius 4 19 16 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 24 443 420 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 25 159 135 G3DSA:2.90.10.10 none none IPR001480
SUPERFAMILY 75 184 110 SSF51110 none none IPR001480
SMART 24 153 130 SM00108 none Bulb-type mannose-specific lectin IPR001480
Phobius 466 494 29 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 341 425 85 PS50948 none PAN/Apple domain profile. IPR003609
SMART 344 424 81 SM00473 none divergent subfamily of APPLE domains IPR003609

4 Localization

Analysis Start End Length
SignalP_EUK 1 23 22
SignalP_GRAM_NEGATIVE 1 23 22
SignalP_GRAM_POSITIVE 1 23 22
TMHMM 444 466 22

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 23   Secretory pathway 1 0.954 0.013 NON-PLANT 23