Protein : Qrob_P0038780.2 Q. robur
Protein Identifier  ? Qrob_P0038780.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR23365//PTHR23365:SF5 - POLY-A BINDING PROTEIN 2 // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 170  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

10 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa002662mg 16 108 + 93 Gaps:7 15.15 647 67.35 2e-31 hypothetical protein
blastp_kegg lcl|pmum:103330500 16 108 + 93 Gaps:7 14.45 678 67.35 2e-31 uncharacterized LOC103330500
blastp_kegg lcl|cit:102624141 31 109 + 79 Gaps:9 10.94 695 77.63 5e-29 uncharacterized LOC102624141
blastp_kegg lcl|pxb:103945856 31 108 + 78 Gaps:3 11.71 692 72.84 1e-28 nucleolin 2
blastp_kegg lcl|cic:CICLE_v10033914mg 31 109 + 79 Gaps:9 10.98 692 75.00 3e-28 hypothetical protein
blastp_kegg lcl|mdm:103438387 31 108 + 78 Gaps:3 11.72 691 71.60 7e-28 uncharacterized LOC103438387
blastp_kegg lcl|vvi:100855398 31 99 + 69 Gaps:3 10.29 700 79.17 1e-27 uncharacterized LOC100855398
blastp_kegg lcl|pvu:PHAVU_005G036300g 19 99 + 81 Gaps:3 12.23 687 69.05 1e-27 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1525260 31 99 + 69 Gaps:4 14.20 514 75.34 2e-27 poly-A binding protein putative
blastp_kegg lcl|pop:POPTR_0001s27600g 31 95 + 65 Gaps:3 10.03 678 77.94 5e-27 POPTRDRAFT_797766 RNA recognition motif-containing family protein

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 31 98 68 PTHR23365:SF5 none none none
Phobius 1 5 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 31 98 68 PTHR23365 none none none
SUPERFAMILY 29 61 33 SSF54928 none none none
Phobius 30 169 140 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 6 29 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 31 60 30 G3DSA:3.30.70.330 none none IPR012677

1 Localization

Analysis Start End Length
TMHMM 10 29 19

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 31   Secretory pathway 1 0.962 0.014 NON-PLANT 31