Protein : Qrob_P0038460.2 Q. robur
Protein Identifier  ? Qrob_P0038460.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR14155:SF75 - E3 UBIQUITIN LIGASE BIG BROTHER (PTHR14155:SF75) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 239  
Kegg Orthology  K19045
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102620285 2 238 + 237 Gaps:2 96.76 247 76.15 1e-133 E3 ubiquitin ligase BIG BROTHER-like
blastp_kegg lcl|cic:CICLE_v10032570mg 1 238 + 238 Gaps:2 97.96 245 75.83 2e-133 hypothetical protein
blastp_kegg lcl|tcc:TCM_005889 1 238 + 238 Gaps:3 97.93 242 73.00 2e-130 RING/U-box superfamily protein isoform 1
blastp_kegg lcl|rcu:RCOM_0403800 7 238 + 232 Gaps:3 97.92 240 72.77 3e-126 protein binding protein putative
blastp_kegg lcl|pop:POPTR_0001s27470g 1 238 + 238 Gaps:2 97.96 245 70.83 4e-126 POPTRDRAFT_797761 hypothetical protein
blastp_kegg lcl|vvi:100253394 1 238 + 238 Gaps:4 97.98 247 70.66 3e-125 E3 ubiquitin ligase BIG BROTHER-like
blastp_kegg lcl|mdm:103413214 1 238 + 238 Gaps:3 97.97 246 69.71 2e-122 E3 ubiquitin ligase BIG BROTHER-like
blastp_kegg lcl|pxb:103954868 1 238 + 238 Gaps:2 97.96 245 68.75 2e-121 E3 ubiquitin ligase BIG BROTHER-like
blastp_kegg lcl|pmum:103330467 1 236 + 236 Gaps:6 97.14 245 71.01 5e-119 E3 ubiquitin ligase BIG BROTHER
blastp_kegg lcl|pvu:PHAVU_011G213300g 1 238 + 238 Gaps:3 97.97 246 68.05 5e-118 hypothetical protein
blastp_pdb 2ep4_A 190 237 + 48 none 64.86 74 43.75 9e-10 mol:protein length:74 RING finger protein 24
blastp_pdb 2kiz_A 191 236 + 46 none 66.67 69 34.78 3e-07 mol:protein length:69 E3 ubiquitin-protein ligase Arkadia
blastp_pdb 2ect_A 191 238 + 48 none 61.54 78 37.50 2e-06 mol:protein length:78 RING finger protein 126
blastp_pdb 1x4j_A 192 235 + 44 none 58.67 75 38.64 3e-06 mol:protein length:75 RING finger protein 38
blastp_pdb 2l0b_A 192 234 + 43 none 47.25 91 39.53 7e-06 mol:protein length:91 E3 ubiquitin-protein ligase Praja-1
blastp_uniprot_sprot sp|Q8L649|BB_ARATH 8 238 + 231 Gaps:3 94.35 248 55.56 1e-96 E3 ubiquitin ligase BIG BROTHER OS Arabidopsis thaliana GN BB PE 1 SV 1
blastp_uniprot_sprot sp|Q9LT17|BBR_ARATH 129 236 + 108 Gaps:3 30.88 340 52.38 2e-30 E3 ubiquitin ligase BIG BROTHER-related OS Arabidopsis thaliana GN BBR PE 2 SV 1
blastp_uniprot_sprot sp|E9QAU8|RN165_MOUSE 146 236 + 91 Gaps:10 29.11 347 32.67 8e-12 RING finger protein 165 OS Mus musculus GN Rnf165 PE 2 SV 1
blastp_uniprot_sprot sp|Q6ZSG1|RN165_HUMAN 146 236 + 91 Gaps:10 29.19 346 32.67 1e-11 RING finger protein 165 OS Homo sapiens GN RNF165 PE 1 SV 1
blastp_uniprot_sprot sp|Q08CG8|RNF44_DANRE 132 236 + 105 Gaps:5 23.21 448 36.54 1e-11 RING finger protein 44 OS Danio rerio GN rnf44 PE 2 SV 1
blastp_uniprot_sprot sp|Q7L0R7|RNF44_HUMAN 124 236 + 113 Gaps:5 25.93 432 34.82 2e-11 RING finger protein 44 OS Homo sapiens GN RNF44 PE 2 SV 1
blastp_uniprot_sprot sp|Q4V7B8|RNF44_RAT 132 236 + 105 Gaps:5 29.71 350 36.54 4e-11 RING finger protein 44 OS Rattus norvegicus GN Rnf44 PE 2 SV 1
blastp_uniprot_sprot sp|Q3UHJ8|RNF44_MOUSE 124 236 + 113 Gaps:5 27.52 407 34.82 4e-11 RING finger protein 44 OS Mus musculus GN Rnf44 PE 2 SV 1
blastp_uniprot_sprot sp|Q9H0F5|RNF38_HUMAN 147 236 + 90 Gaps:4 17.09 515 36.36 5e-11 RING finger protein 38 OS Homo sapiens GN RNF38 PE 1 SV 4
blastp_uniprot_sprot sp|Q8BI21|RNF38_MOUSE 147 236 + 90 Gaps:4 16.99 518 37.50 1e-10 RING finger protein 38 OS Mus musculus GN Rnf38 PE 2 SV 1
rpsblast_cdd gnl|CDD|205816 192 235 + 44 none 95.65 46 40.91 6e-11 pfam13639 zf-RING_2 Ring finger domain.
rpsblast_cdd gnl|CDD|35099 192 236 + 45 Gaps:1 12.30 374 36.96 9e-09 COG5540 COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|206094 189 234 + 46 Gaps:2 97.78 45 36.36 6e-07 pfam13923 zf-C3HC4_2 Zinc finger C3HC4 type (RING finger).
rpsblast_kog gnl|CDD|39828 160 237 + 78 Gaps:4 21.84 348 28.95 1e-12 KOG4628 KOG4628 KOG4628 Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 134 238 105 PTHR14155:SF75 none none none
Pfam 191 232 42 PF13639 none Ring finger domain IPR001841
ProSiteProfiles 192 233 42 PS50089 none Zinc finger RING-type profile. IPR001841
SUPERFAMILY 191 236 46 SSF57850 none none none
SMART 192 232 41 SM00184 none Ring finger IPR001841
PANTHER 134 238 105 PTHR14155 none none none
Gene3D 189 236 48 G3DSA:3.30.40.10 none none IPR013083

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4

0 Targeting