Protein : Qrob_P0038440.2 Q. robur
Protein Identifier  ? Qrob_P0038440.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=102) PF03140 - Plant protein of unknown function Gene Prediction Quality  validated
Protein length 

Sequence

Length: 409  
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Protein Sequence Displayer

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0 Synonyms

0 GO Terms

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sot:102581204 28 389 + 362 Gaps:53 77.16 486 35.20 2e-55 UPF0481 protein At3g47200-like
blastp_kegg lcl|sly:101253145 28 389 + 362 Gaps:45 77.16 486 33.87 3e-55 UPF0481 protein At3g47200-like
blastp_kegg lcl|mdm:103454565 27 405 + 379 Gaps:75 85.33 443 33.86 4e-46 putative UPF0481 protein At3g02645
blastp_kegg lcl|pop:POPTR_0006s04150g 26 405 + 380 Gaps:74 88.10 420 34.05 9e-45 POPTRDRAFT_762035 hypothetical protein
blastp_kegg lcl|pop:POPTR_0993s00200g 26 405 + 380 Gaps:95 84.60 474 32.17 3e-43 hypothetical protein
blastp_kegg lcl|sot:102597160 28 405 + 378 Gaps:66 93.39 439 30.49 4e-43 UPF0481 protein At3g47200-like
blastp_kegg lcl|pxb:103933978 27 405 + 379 Gaps:72 84.33 466 30.03 1e-40 UPF0481 protein At3g47200-like
blastp_kegg lcl|cic:CICLE_v10004884mg 28 389 + 362 Gaps:53 76.00 475 32.41 2e-39 hypothetical protein
blastp_kegg lcl|cit:102613330 28 391 + 364 Gaps:53 76.42 475 31.96 1e-38 UPF0481 protein At3g47200-like
blastp_kegg lcl|pop:POPTR_0016s03940g 22 396 + 375 Gaps:48 83.08 461 29.24 3e-38 POPTRDRAFT_576198 hypothetical protein
blastp_uniprot_sprot sp|Q9SD53|Y3720_ARATH 28 405 + 378 Gaps:53 81.30 476 25.58 1e-14 UPF0481 protein At3g47200 OS Arabidopsis thaliana GN At3g47200 PE 1 SV 1
blastp_uniprot_sprot sp|P0C897|Y3264_ARATH 26 156 + 131 Gaps:10 23.25 529 31.71 4e-06 Putative UPF0481 protein At3g02645 OS Arabidopsis thaliana GN At3g02645 PE 3 SV 1
rpsblast_cdd gnl|CDD|190538 26 402 + 377 Gaps:70 96.38 387 29.76 9e-49 pfam03140 DUF247 Plant protein of unknown function. The function of the plant proteins constituting this family is unknown.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 408 408 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 25 402 378 PF03140 none Plant protein of unknown function IPR004158
PANTHER 26 204 179 PTHR31549 none none none
PANTHER 224 402 179 PTHR31549 none none none
Phobius 388 407 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 387 387 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

1 Localization

Analysis Start End Length
TMHMM 388 407 19

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4

0 Targeting