Protein : Qrob_P0038370.2 Q. robur
Protein Identifier  ? Qrob_P0038370.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=102) PF03140 - Plant protein of unknown function Gene Prediction Quality  validated
Protein length 

Sequence

Length: 473  
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0 Synonyms

0 GO Terms

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sot:102581204 13 467 + 455 Gaps:52 89.09 486 38.80 6e-75 UPF0481 protein At3g47200-like
blastp_kegg lcl|sly:101253145 13 467 + 455 Gaps:42 89.09 486 38.34 3e-73 UPF0481 protein At3g47200-like
blastp_kegg lcl|mdm:103454565 28 469 + 442 Gaps:42 90.29 443 34.75 6e-62 putative UPF0481 protein At3g02645
blastp_kegg lcl|pop:POPTR_0006s04150g 26 472 + 447 Gaps:60 94.52 420 36.52 5e-61 POPTRDRAFT_762035 hypothetical protein
blastp_kegg lcl|pop:POPTR_0993s00200g 12 470 + 459 Gaps:38 92.62 474 33.94 7e-61 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10004884mg 14 470 + 457 Gaps:49 88.00 475 36.12 2e-57 hypothetical protein
blastp_kegg lcl|pxb:103933978 28 469 + 442 Gaps:27 89.06 466 30.12 3e-57 UPF0481 protein At3g47200-like
blastp_kegg lcl|cit:102613330 14 470 + 457 Gaps:49 88.00 475 36.12 1e-56 UPF0481 protein At3g47200-like
blastp_kegg lcl|sot:102597160 29 468 + 440 Gaps:41 97.72 439 33.57 8e-56 UPF0481 protein At3g47200-like
blastp_kegg lcl|pop:POPTR_0016s03890g 27 468 + 442 Gaps:39 88.20 466 32.36 2e-52 POPTRDRAFT_777053 hypothetical protein
blastp_uniprot_sprot sp|Q9SD53|Y3720_ARATH 43 469 + 427 Gaps:52 82.98 476 28.10 1e-18 UPF0481 protein At3g47200 OS Arabidopsis thaliana GN At3g47200 PE 1 SV 1
blastp_uniprot_sprot sp|P0C897|Y3264_ARATH 271 444 + 174 Gaps:14 30.62 529 27.16 4e-06 Putative UPF0481 protein At3g02645 OS Arabidopsis thaliana GN At3g02645 PE 3 SV 1
rpsblast_cdd gnl|CDD|190538 28 459 + 432 Gaps:59 99.48 387 33.77 1e-55 pfam03140 DUF247 Plant protein of unknown function. The function of the plant proteins constituting this family is unknown.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 443 443 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 468 472 5 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 444 467 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 28 458 431 PF03140 none Plant protein of unknown function IPR004158
PANTHER 266 469 204 PTHR31549 none none none
PANTHER 14 235 222 PTHR31549 none none none

1 Localization

Analysis Start End Length
TMHMM 446 468 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4

0 Targeting