Protein : Qrob_P0038160.2 Q. robur
Protein Identifier  ? Qrob_P0038160.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) PTHR13301//PTHR13301:SF28 - X-BOX TRANSCRIPTION FACTOR-RELATED // SUBFAMILY NOT NAMED (PTHR13301:SF28) Code Enzyme  EC:2.4.1.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1087  
Kegg Orthology  K10999
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0030244 cellulose biosynthetic process The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
GO:0016760 cellulose synthase (UDP-forming) activity Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1).

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103330444 1 1086 + 1086 Gaps:4 100.00 1082 94.45 0.0 cellulose synthase A catalytic subunit 3 [UDP-forming]
blastp_kegg lcl|pper:PRUPE_ppa000593mg 1 1086 + 1086 Gaps:4 100.00 1082 94.27 0.0 hypothetical protein
blastp_kegg lcl|fve:101296424 1 1086 + 1086 Gaps:3 100.00 1083 93.35 0.0 cellulose synthase A catalytic subunit 3 [UDP-forming]-like
blastp_kegg lcl|pxb:103954859 1 1086 + 1086 Gaps:5 100.00 1081 92.23 0.0 cellulose synthase A catalytic subunit 3 [UDP-forming]
blastp_kegg lcl|mdm:103438406 1 1086 + 1086 Gaps:4 100.00 1082 93.16 0.0 cellulose synthase A catalytic subunit 3 [UDP-forming]
blastp_kegg lcl|pxb:103945881 1 1086 + 1086 Gaps:4 100.00 1082 93.07 0.0 cellulose synthase A catalytic subunit 3 [UDP-forming]-like
blastp_kegg lcl|rcu:RCOM_0493240 1 1086 + 1086 Gaps:7 100.00 1085 91.89 0.0 Cellulose synthase A catalytic subunit 6 [UDP-forming] putative (EC:2.4.1.12)
blastp_kegg lcl|pvu:PHAVU_005G022100g 1 1086 + 1086 Gaps:12 99.91 1075 93.11 0.0 hypothetical protein
blastp_kegg lcl|sot:102577596 1 1086 + 1086 Gaps:3 100.00 1083 91.04 0.0 STCESA3 cellulose synthase
blastp_kegg lcl|cam:101499537 1 1086 + 1086 Gaps:9 100.00 1077 92.20 0.0 cellulose synthase A catalytic subunit 3 [UDP-forming]-like
blastp_pdb 1weo_A 3 78 + 76 none 81.72 93 59.21 2e-25 mol:protein length:93 cellulose synthase catalytic subunit (IRX3)
blastp_uniprot_sprot sp|Q941L0|CESA3_ARATH 1 1086 + 1086 Gaps:21 100.00 1065 87.42 0.0 Cellulose synthase A catalytic subunit 3 [UDP-forming] OS Arabidopsis thaliana GN CESA3 PE 1 SV 2
blastp_uniprot_sprot sp|Q84ZN6|CESA8_ORYSJ 8 1086 + 1079 Gaps:34 99.44 1081 84.47 0.0 Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS Oryza sativa subsp. japonica GN CESA8 PE 2 SV 1
blastp_uniprot_sprot sp|Q84M43|CESA2_ORYSJ 8 1086 + 1079 Gaps:38 99.81 1073 83.57 0.0 Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS Oryza sativa subsp. japonica GN CESA2 PE 2 SV 1
blastp_uniprot_sprot sp|A2XN66|CESA2_ORYSI 8 1086 + 1079 Gaps:38 99.81 1073 83.57 0.0 Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS Oryza sativa subsp. indica GN CESA2 PE 3 SV 1
blastp_uniprot_sprot sp|Q6AT26|CESA1_ORYSJ 9 1086 + 1078 Gaps:33 97.30 1076 72.40 0.0 Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS Oryza sativa subsp. japonica GN CESA1 PE 2 SV 1
blastp_uniprot_sprot sp|A2Y0X2|CESA1_ORYSI 9 1086 + 1078 Gaps:33 97.30 1076 72.40 0.0 Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS Oryza sativa subsp. indica GN CESA1 PE 3 SV 1
blastp_uniprot_sprot sp|O48946|CESA1_ARATH 1 1071 + 1071 Gaps:33 96.76 1081 71.03 0.0 Cellulose synthase A catalytic subunit 1 [UDP-forming] OS Arabidopsis thaliana GN CESA1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SKJ5|CESAA_ARATH 4 1072 + 1069 Gaps:40 97.37 1065 70.01 0.0 Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS Arabidopsis thaliana GN CESA10 PE 2 SV 1
blastp_uniprot_sprot sp|Q69P51|CESA9_ORYSJ 5 1086 + 1082 Gaps:74 98.01 1055 72.82 0.0 Cellulose synthase A catalytic subunit 9 [UDP-forming] OS Oryza sativa subsp. japonica GN CESA9 PE 2 SV 1
blastp_uniprot_sprot sp|A2Z1C8|CESA9_ORYSI 5 1086 + 1082 Gaps:74 98.01 1055 72.82 0.0 Cellulose synthase A catalytic subunit 9 [UDP-forming] OS Oryza sativa subsp. indica GN CESA9 PE 2 SV 1
rpsblast_cdd gnl|CDD|178244 1 1086 + 1086 Gaps:9 100.00 1079 93.33 0.0 PLN02638 PLN02638 cellulose synthase A (UDP-forming) catalytic subunit.
rpsblast_cdd gnl|CDD|178022 4 1086 + 1083 Gaps:34 97.97 1085 74.04 0.0 PLN02400 PLN02400 cellulose synthase.
rpsblast_cdd gnl|CDD|178055 10 1086 + 1077 Gaps:32 97.35 1094 69.30 0.0 PLN02436 PLN02436 cellulose synthase A.
rpsblast_cdd gnl|CDD|177841 5 1086 + 1082 Gaps:81 97.98 1040 73.99 0.0 PLN02189 PLN02189 cellulose synthase.
rpsblast_cdd gnl|CDD|178503 18 1086 + 1069 Gaps:98 98.56 1044 70.26 0.0 PLN02915 PLN02915 cellulose synthase A [UDP-forming] catalytic subunit.
rpsblast_cdd gnl|CDD|146277 358 1079 + 722 Gaps:11 99.58 716 83.45 0.0 pfam03552 Cellulose_synt Cellulose synthase. Cellulose an aggregate of unbranched polymers of beta-1 4-linked glucose residues is the major component of wood and thus paper and is synthesised by plants most algae some bacteria and fungi and even some animals. The genes that synthesise cellulose in higher plants differ greatly from the well-characterized genes found in Acetobacter and Agrobacterium sp. More correctly designated as 'cellulose synthase catalytic subunits' plant cellulose synthase (CesA) proteins are integral membrane proteins approximately 1 000 amino acids in length. There are a number of highly conserved residues including several motifs shown to be necessary for processive glycosyltransferase activity.
rpsblast_cdd gnl|CDD|177846 16 1085 + 1070 Gaps:110 99.28 977 68.56 0.0 PLN02195 PLN02195 cellulose synthase A.
rpsblast_cdd gnl|CDD|177890 256 1069 + 814 Gaps:120 75.77 1135 52.44 0.0 PLN02248 PLN02248 cellulose synthase-like protein.
rpsblast_cdd gnl|CDD|177842 283 1065 + 783 Gaps:131 97.35 756 36.96 1e-120 PLN02190 PLN02190 cellulose synthase-like protein.

30 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 934 956 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 4 87 84 G3DSA:3.30.40.10 none none IPR013083
Phobius 896 914 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 372 422 51 SSF53448 none none IPR029044
SUPERFAMILY 526 647 122 SSF53448 none none IPR029044
SUPERFAMILY 764 896 133 SSF53448 none none IPR029044
Phobius 977 1005 29 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 957 976 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 277 277 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1068 1086 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 885 895 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 304 324 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 298 303 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1036 1046 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 196 218 23 PTHR13301 none none none
PANTHER 1 119 119 PTHR13301 none none none
PANTHER 248 1080 833 PTHR13301 none none none
Phobius 278 297 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 864 884 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 915 933 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1017 1035 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 11 85 75 PF14569 "KEGG:00500+2.4.1.12","MetaCyc:PWY-1001","UniPathway:UPA00695" Zinc-binding RING-finger IPR027934
Phobius 1047 1067 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1006 1016 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 196 218 23 PTHR13301:SF28 none none none
PANTHER 1 119 119 PTHR13301:SF28 none none none
PANTHER 248 1080 833 PTHR13301:SF28 none none none
Pfam 358 1078 721 PF03552 none Cellulose synthase IPR005150
Phobius 325 863 539 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 6 87 82 SSF57850 none none none

8 Localization

Analysis Start End Length
TMHMM 305 324 19
TMHMM 981 1003 22
TMHMM 933 955 22
TMHMM 862 884 22
TMHMM 1013 1035 22
TMHMM 1048 1067 19
TMHMM 896 918 22
TMHMM 281 298 17

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting