Protein : Qrob_P0038080.2 Q. robur
Protein Identifier  ? Qrob_P0038080.2 Organism . Name  Quercus robur
Score  88.1 Score Type  egn
Protein Description  (M=1) K11159 - carotenoid cleavage dioxygenase Alias (in v1)  Qrob_P0564050.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 613  
Kegg Orthology  K11159
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Sequence Feature Displayer

Protein Sequence Displayer

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0 Synonyms

0 GO Terms

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103499930 1 538 + 538 Gaps:10 98.35 547 77.88 0.0 carotenoid 9 10(9' 10')-cleavage dioxygenase 1
blastp_kegg lcl|csv:101207315 1 538 + 538 Gaps:10 98.35 547 77.14 0.0 carotenoid 9 10(9' 10')-cleavage dioxygenase 1-like
blastp_kegg lcl|pper:PRUPE_ppa003814mg 3 538 + 536 Gaps:14 97.26 547 78.01 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_005874 1 538 + 538 Gaps:13 98.54 549 77.26 0.0 Carotenoid cleavage dioxygenase 1 isoform 1
blastp_kegg lcl|pmum:103330446 3 538 + 536 Gaps:14 97.26 547 77.82 0.0 carotenoid 9 10(9' 10')-cleavage dioxygenase 1
blastp_kegg lcl|vvi:100232972 4 538 + 535 Gaps:14 97.25 546 77.40 0.0 CCD1 9 10[9' 10']carotenoid cleavage dioxygenase
blastp_kegg lcl|mdm:103438403 1 538 + 538 Gaps:14 91.75 582 76.40 0.0 carotenoid 9 10(9' 10')-cleavage dioxygenase 1-like
blastp_kegg lcl|pop:POPTR_0009s06530g 4 538 + 535 Gaps:10 97.10 551 75.51 0.0 carotenoid cleavage dioxygenase 1 family protein
blastp_kegg lcl|vvi:100249903 4 538 + 535 Gaps:20 97.28 552 76.91 0.0 carotenoid 9 10(9' 10')-cleavage dioxygenase 1-like
blastp_kegg lcl|fve:101297288 17 538 + 522 Gaps:10 93.72 557 77.59 0.0 carotenoid 9 10(9' 10')-cleavage dioxygenase 1-like
blastp_pdb 3npe_A 58 537 + 480 Gaps:43 89.41 529 40.38 1e-99 mol:protein length:529 9-cis-epoxycarotenoid dioxygenase 1 chloropl
blastp_pdb 2bix_B 77 536 + 460 Gaps:85 92.04 490 28.60 2e-30 mol:protein length:490 APOCAROTENOID-CLEAVING OXYGENASE
blastp_pdb 2bix_A 77 536 + 460 Gaps:85 92.04 490 28.60 2e-30 mol:protein length:490 APOCAROTENOID-CLEAVING OXYGENASE
blastp_pdb 2biw_D 77 536 + 460 Gaps:85 92.04 490 28.60 2e-30 mol:protein length:490 APOCAROTENOID-CLEAVING OXYGENASE
blastp_pdb 2biw_C 77 536 + 460 Gaps:85 92.04 490 28.60 2e-30 mol:protein length:490 APOCAROTENOID-CLEAVING OXYGENASE
blastp_pdb 2biw_B 77 536 + 460 Gaps:85 92.04 490 28.60 2e-30 mol:protein length:490 APOCAROTENOID-CLEAVING OXYGENASE
blastp_pdb 2biw_A 77 536 + 460 Gaps:85 92.04 490 28.60 2e-30 mol:protein length:490 APOCAROTENOID-CLEAVING OXYGENASE
blastp_uniprot_sprot sp|Q94IR2|CCD1_PHAVU 1 538 + 538 Gaps:14 98.34 543 74.91 0.0 Carotenoid 9 10(9' 10')-cleavage dioxygenase 1 OS Phaseolus vulgaris GN CCD1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8LP17|CCD1_PEA 15 538 + 524 Gaps:10 96.86 541 75.19 0.0 Carotenoid 9 10(9' 10')-cleavage dioxygenase 1 OS Pisum sativum GN CCD1 PE 2 SV 1
blastp_uniprot_sprot sp|O65572|CCD1_ARATH 14 538 + 525 Gaps:13 97.03 538 74.52 0.0 Carotenoid 9 10(9' 10')-cleavage dioxygenase 1 OS Arabidopsis thaliana GN CCD1 PE 1 SV 2
blastp_uniprot_sprot sp|Q84KG5|CCD_CROSA 17 538 + 522 Gaps:10 95.60 546 73.95 0.0 Carotenoid 9 10(9' 10')-cleavage dioxygenase OS Crocus sativus GN CCD PE 1 SV 1
blastp_uniprot_sprot sp|O49675|CCD4_ARATH 23 544 + 522 Gaps:32 87.39 595 36.54 1e-99 Probable carotenoid cleavage dioxygenase 4 chloroplastic OS Arabidopsis thaliana GN CCD4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C6Z1|NCED5_ARATH 23 541 + 519 Gaps:42 86.42 589 37.52 3e-98 Probable 9-cis-epoxycarotenoid dioxygenase NCED5 chloroplastic OS Arabidopsis thaliana GN NCED5 PE 1 SV 1
blastp_uniprot_sprot sp|O24592|NCED1_MAIZE 58 537 + 480 Gaps:43 78.31 604 40.38 5e-98 9-cis-epoxycarotenoid dioxygenase 1 chloroplastic OS Zea mays GN VP14 PE 1 SV 2
blastp_uniprot_sprot sp|Q9M9F5|NCED9_ARATH 24 538 + 515 Gaps:41 76.41 657 37.65 8e-96 9-cis-epoxycarotenoid dioxygenase NCED9 chloroplastic OS Arabidopsis thaliana GN NCED9 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LRR7|NCED3_ARATH 58 536 + 479 Gaps:42 77.96 599 38.54 3e-92 9-cis-epoxycarotenoid dioxygenase NCED3 chloroplastic OS Arabidopsis thaliana GN NCED3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LRM7|NCED6_ARATH 18 538 + 521 Gaps:49 89.43 577 38.18 5e-91 9-cis-epoxycarotenoid dioxygenase NCED6 chloroplastic OS Arabidopsis thaliana GN NCED6 PE 2 SV 1
rpsblast_cdd gnl|CDD|178109 3 538 + 536 Gaps:10 98.35 545 78.54 0.0 PLN02491 PLN02491 carotenoid 9 10(9' 10')-cleavage dioxygenase.
rpsblast_cdd gnl|CDD|202519 62 536 + 475 Gaps:61 99.79 469 41.24 1e-126 pfam03055 RPE65 Retinal pigment epithelial membrane protein. This family represents a retinal pigment epithelial membrane receptor which is abundantly expressed in retinal pigment epithelium and binds plasma retinal binding protein. The family also includes the sequence related neoxanthin cleavage enzyme in plants and lignostilbene-alpha beta-dioxygenase in bacteria.
rpsblast_cdd gnl|CDD|177900 28 538 + 511 Gaps:40 84.92 590 40.32 1e-119 PLN02258 PLN02258 9-cis-epoxycarotenoid dioxygenase NCED.

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 21 107 87 PTHR10543:SF24 none none none
Pfam 60 106 47 PF03055 none Retinal pigment epithelial membrane protein IPR004294
PANTHER 21 107 87 PTHR10543 none none IPR004294

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting