Protein : Qrob_P0032430.2 Q. robur
Protein Identifier  ? Qrob_P0032430.2 Organism . Name  Quercus robur
Score  5.1 Score Type  egn
Protein Description  (M=1) PF00400//PF00637//PF12816 - WD domain, G-beta repeat // Region in Clathrin and VPS // Golgi CORVET complex core vacuolar protein 8 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1810  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103328598 2 1794 + 1793 Gaps:212 98.91 1924 67.58 0.0 vacuolar protein sorting-associated protein 8 homolog
blastp_kegg lcl|pper:PRUPE_ppa000078mg 2 1795 + 1794 Gaps:172 98.96 1922 67.88 0.0 hypothetical protein
blastp_kegg lcl|mdm:103439435 2 1795 + 1794 Gaps:189 98.96 1931 66.14 0.0 vacuolar protein sorting-associated protein 8 homolog
blastp_kegg lcl|tcc:TCM_005038 4 1796 + 1793 Gaps:170 99.69 1939 64.15 0.0 Transducin family protein / WD-40 repeat family protein isoform 1
blastp_kegg lcl|pxb:103956355 2 1795 + 1794 Gaps:190 98.96 1930 65.97 0.0 vacuolar protein sorting-associated protein 8 homolog
blastp_kegg lcl|cic:CICLE_v10018449mg 4 1796 + 1793 Gaps:166 99.13 1950 63.22 0.0 hypothetical protein
blastp_kegg lcl|cit:102621344 4 1796 + 1793 Gaps:166 99.13 1950 63.22 0.0 vacuolar protein sorting-associated protein 8 homolog
blastp_kegg lcl|pop:POPTR_0014s10130g 2 1767 + 1766 Gaps:181 96.00 1976 64.00 0.0 POPTRDRAFT_774563 hypothetical protein
blastp_kegg lcl|fve:101307937 4 1795 + 1792 Gaps:197 99.53 1916 62.40 0.0 vacuolar protein sorting-associated protein 8 homolog
blastp_kegg lcl|pmum:103332220 322 1795 + 1474 Gaps:131 98.78 1562 71.42 0.0 vacuolar protein sorting-associated protein 8 homolog
blastp_uniprot_sprot sp|Q0P5W1|VPS8_MOUSE 381 1691 + 1311 Gaps:267 81.99 1427 28.63 4e-91 Vacuolar protein sorting-associated protein 8 homolog OS Mus musculus GN Vps8 PE 2 SV 1
blastp_uniprot_sprot sp|Q8N3P4|VPS8_HUMAN 382 1675 + 1294 Gaps:253 80.46 1428 29.33 6e-86 Vacuolar protein sorting-associated protein 8 homolog OS Homo sapiens GN VPS8 PE 1 SV 3
blastp_uniprot_sprot sp|P39702|VPS8_YEAST 917 1044 + 128 Gaps:6 10.52 1274 19.40 2e-07 Vacuolar protein sorting-associated protein 8 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN VPS8 PE 1 SV 2
rpsblast_cdd gnl|CDD|193292 925 1044 + 120 Gaps:6 65.28 193 45.24 3e-46 pfam12816 Vps8 Golgi CORVET complex core vacuolar protein 8. Vps8 is one of the Golgi complex components necessary for vacuolar sorting. Eukaryotic cells contain a highly dynamic endo-membrane system in which individual organelles keep their identity despite continuous vesicle generation and fusion. Vesicles that bud from a donor membrane are targeted and delivered to each individual organelle where they release their cargo after fusion with the acceptor membrane. Vps8 is the core component of the endosomal tethering complex CORVET (class C core vacuole/endosome tethering). Vps8 co-operates with Vps21-GTP to mediate endosomal clustering in a reaction that is dependent on Vps3. Vps8 is the only CORVET subunit that is enriched on late endosomes suggesting that it is a marker for the maturation of late endosomes. Late endosomes form intralumenal vesicles and the resulting multivesicular bodies fuse with the vacuole to release their cargoes.
rpsblast_kog gnl|CDD|37290 383 1715 + 1333 Gaps:238 94.53 1206 31.14 1e-82 KOG2079 KOG2079 KOG2079 Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking secretion and vesicular transport].

23 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 395 503 109 G3DSA:2.130.10.10 none none IPR015943
Gene3D 670 727 58 G3DSA:2.130.10.10 none none IPR015943
PANTHER 1537 1707 171 PTHR12816:SF19 none none none
ProSitePatterns 463 477 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
SUPERFAMILY 672 726 55 SSF50978 none none IPR017986
SUPERFAMILY 393 505 113 SSF50978 none none IPR017986
ProSiteProfiles 444 485 42 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
ProSiteProfiles 1646 1694 49 PS50089 none Zinc finger RING-type profile. IPR001841
SMART 435 476 42 SM00320 none WD40 repeats IPR001680
PANTHER 623 855 233 PTHR12816 none none none
PANTHER 874 1330 457 PTHR12816 none none none
PANTHER 1537 1707 171 PTHR12816 none none none
ProSiteProfiles 451 485 35 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
Coils 244 278 35 Coil none none none
PANTHER 623 855 233 PTHR12816:SF19 none none none
PANTHER 1360 1513 154 PTHR12816:SF19 none none none
Pfam 446 476 31 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 1363 1426 64 PF00637 none Region in Clathrin and VPS IPR000547
PANTHER 874 1330 457 PTHR12816:SF19 none none none
PANTHER 383 586 204 PTHR12816:SF19 none none none
PANTHER 383 586 204 PTHR12816 none none none
PANTHER 1360 1513 154 PTHR12816 none none none
Pfam 925 1044 120 PF12816 none Golgi CORVET complex core vacuolar protein 8 IPR025941

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting