Protein : Qrob_P0030620.2 Q. robur
Protein Identifier  ? Qrob_P0030620.2 Organism . Name  Quercus robur
Score  88.0 Score Type  egn
Protein Description  (M=1) KOG0105//KOG0106//KOG0107//KOG0117//KOG0122//KOG4207 - Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]. // Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]. // Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]. // Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]. // Translation initiation factor 3 subunit g (eIF-3g) [Translation ribosomal structure and biogenesis]. // Predicted splicing factor SR protein superfamily [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 107  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100813882 1 60 + 60 none 34.09 176 91.67 2e-30 serine/arginine-rich splicing factor RSZ21-like
blastp_kegg lcl|csv:101213165 1 60 + 60 none 37.97 158 86.67 3e-30 serine/arginine-rich splicing factor RSZ21-like
blastp_kegg lcl|cam:101493896 1 60 + 60 none 33.15 181 86.67 4e-30 serine/arginine-rich splicing factor RSZ21-like
blastp_kegg lcl|cic:CICLE_v10032693mg 1 60 + 60 none 34.09 176 91.67 5e-30 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0285870 1 60 + 60 none 32.61 184 91.67 7e-30 arginine/serine-rich splicing factor putative
blastp_kegg lcl|cit:102606665 1 60 + 60 none 33.33 180 91.67 7e-30 serine/arginine-rich splicing factor RSZ21-like
blastp_kegg lcl|cmo:103489020 1 60 + 60 none 32.09 187 86.67 8e-30 serine/arginine-rich splicing factor RSZ21
blastp_kegg lcl|mdm:103451950 1 60 + 60 none 32.79 183 86.67 3e-29 serine/arginine-rich splicing factor RSZ21-like
blastp_kegg lcl|pxb:103953511 1 60 + 60 none 32.79 183 86.67 7e-29 serine/arginine-rich splicing factor RSZ21
blastp_kegg lcl|mdm:103402999 1 60 + 60 none 32.97 182 86.67 1e-28 serine/arginine-rich splicing factor RSZ21-like
blastp_pdb 2i2y_A 3 60 + 58 none 38.67 150 63.79 1e-18 mol:protein length:150 Fusion protein consists of immunoglobin G-Bin
blastp_pdb 2hvz_A 3 63 + 61 none 60.40 101 57.38 2e-18 mol:protein length:101 Splicing factor arginine/serine-rich 7
blastp_pdb 2i38_A 3 60 + 58 none 38.67 150 63.79 3e-18 mol:protein length:150 Fusion protein consists of immunoglobin G-Bin
blastp_pdb 1x4a_A 3 60 + 58 Gaps:4 55.05 109 50.00 3e-10 mol:protein length:109 splicing factor arginine/serine-rich 1 (spli
blastp_pdb 2dnm_A 6 61 + 56 Gaps:5 59.22 103 44.26 3e-06 mol:protein length:103 SRp46 splicing factor
blastp_pdb 2kn4_A 1 63 + 63 Gaps:5 43.04 158 38.24 6e-06 mol:protein length:158 Immunoglobulin G-binding protein G Splicing
blastp_pdb 2lec_A 1 63 + 63 Gaps:5 50.37 135 38.24 6e-06 mol:protein length:135 Serine/arginine-rich splicing factor 2
blastp_pdb 2leb_A 1 63 + 63 Gaps:5 50.37 135 38.24 6e-06 mol:protein length:135 Serine/arginine-rich splicing factor 2
blastp_pdb 2lea_A 1 63 + 63 Gaps:5 50.37 135 38.24 6e-06 mol:protein length:135 Serine/arginine-rich splicing factor 2
blastp_pdb 2kxh_A 2 59 + 58 Gaps:5 31.66 199 30.16 8e-06 mol:protein length:199 Poly(U)-binding-splicing factor PUF60
blastp_uniprot_sprot sp|O81127|RZP21_ARATH 1 59 + 59 none 31.55 187 79.66 1e-26 Serine/arginine-rich splicing factor RSZ21 OS Arabidopsis thaliana GN RSZ21 PE 1 SV 1
blastp_uniprot_sprot sp|O81126|RZP22_ARATH 1 71 + 71 none 35.50 200 69.01 2e-26 Serine/arginine-rich splicing factor RSZ22 OS Arabidopsis thaliana GN RSZ22 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SJA6|RZ22A_ARATH 1 71 + 71 none 36.22 196 66.20 1e-25 Serine/arginine-rich splicing factor RSZ22A OS Arabidopsis thaliana GN RSZ22A PE 1 SV 1
blastp_uniprot_sprot sp|Q6K9C3|RZP23_ORYSJ 1 60 + 60 none 30.00 200 73.33 3e-25 Serine/arginine-rich splicing factor RSZ23 OS Oryza sativa subsp. japonica GN RSZ23 PE 2 SV 1
blastp_uniprot_sprot sp|Q69KL9|RZ21A_ORYSJ 1 60 + 60 none 32.43 185 73.33 3e-25 Serine/arginine-rich splicing factor RSZ21A OS Oryza sativa subsp. japonica GN RSZ21A PE 2 SV 1
blastp_uniprot_sprot sp|Q6K4N0|RSZ21_ORYSJ 1 103 + 103 Gaps:14 60.00 185 42.34 3e-23 Serine/arginine-rich splicing factor RSZ21 OS Oryza sativa subsp. japonica GN RSZP21 PE 2 SV 1
blastp_uniprot_sprot sp|Q02427|RBP1_DROME 3 61 + 59 none 40.97 144 62.71 1e-19 RNA-binding protein 1 OS Drosophila melanogaster GN Rbp1 PE 2 SV 3
blastp_uniprot_sprot sp|P84104|SRSF3_MOUSE 3 60 + 58 none 35.37 164 63.79 2e-17 Serine/arginine-rich splicing factor 3 OS Mus musculus GN Srsf3 PE 1 SV 1
blastp_uniprot_sprot sp|P84103|SRSF3_HUMAN 3 60 + 58 none 35.37 164 63.79 2e-17 Serine/arginine-rich splicing factor 3 OS Homo sapiens GN SRSF3 PE 1 SV 1
blastp_uniprot_sprot sp|Q3SZR8|SRSF3_BOVIN 3 60 + 58 none 35.37 164 63.79 2e-17 Serine/arginine-rich splicing factor 3 OS Bos taurus GN SRSF3 PE 2 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 4 63 60 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
PANTHER 1 60 60 PTHR10548 none none none
ProSiteProfiles 2 85 84 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
SMART 3 67 65 SM00360 none RNA recognition motif IPR000504
Gene3D 2 62 61 G3DSA:3.30.70.330 none none IPR012677
SUPERFAMILY 3 62 60 SSF54928 none none none

0 Localization

0 Qtllist

0 Targeting