Protein : Qrob_P0029260.2 Q. robur
Protein Identifier  ? Qrob_P0029260.2 Organism . Name  Quercus robur
Score  54.0 Score Type  egn
Protein Description  (M=1) PF00098//PF04438 - Zinc knuckle // HIT zinc finger Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 528  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_015986 1 313 + 313 Gaps:33 75.28 441 63.25 3e-131 P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1
blastp_kegg lcl|pmum:103337177 1 308 + 308 Gaps:40 74.21 442 64.94 2e-130 uncharacterized LOC103337177
blastp_kegg lcl|cit:102612569 1 313 + 313 Gaps:40 75.34 442 65.17 3e-128 uncharacterized LOC102612569
blastp_kegg lcl|cic:CICLE_v10020230mg 1 308 + 308 Gaps:30 73.61 432 66.67 4e-126 hypothetical protein
blastp_kegg lcl|gmx:100814892 1 301 + 301 Gaps:37 73.54 446 58.54 8e-121 uncharacterized LOC100814892
blastp_kegg lcl|fve:101306820 1 308 + 308 Gaps:45 74.61 449 60.30 9e-121 uncharacterized protein LOC101306820
blastp_kegg lcl|cmo:103482617 1 344 + 344 Gaps:32 82.27 440 52.76 5e-119 uncharacterized LOC103482617
blastp_kegg lcl|cam:101493421 1 301 + 301 Gaps:43 73.42 444 59.82 8e-119 uncharacterized LOC101493421
blastp_kegg lcl|pxb:103940224 1 308 + 308 Gaps:41 74.15 441 60.24 2e-115 uncharacterized LOC103940224
blastp_kegg lcl|csv:101227135 1 344 + 344 Gaps:35 82.39 443 50.96 2e-114 uncharacterized LOC101227135
blastp_pdb 2yqp_A 139 179 + 41 Gaps:1 70.00 60 71.43 6e-15 mol:protein length:60 Probable ATP-dependent RNA helicase DDX59
blastp_uniprot_sprot sp|Q9DBN9|DDX59_MOUSE 139 220 + 82 Gaps:6 12.28 619 51.32 1e-14 Probable ATP-dependent RNA helicase DDX59 OS Mus musculus GN Ddx59 PE 2 SV 1
blastp_uniprot_sprot sp|Q66HG7|DDX59_RAT 139 186 + 48 none 8.15 589 68.75 2e-14 Probable ATP-dependent RNA helicase DDX59 OS Rattus norvegicus GN Ddx59 PE 2 SV 1
blastp_uniprot_sprot sp|Q5T1V6|DDX59_HUMAN 139 179 + 41 Gaps:1 6.79 619 71.43 4e-13 Probable ATP-dependent RNA helicase DDX59 OS Homo sapiens GN DDX59 PE 1 SV 1
blastp_uniprot_sprot sp|Q3EBD3|RH41_ARATH 131 177 + 47 Gaps:1 9.50 505 62.50 2e-11 DEAD-box ATP-dependent RNA helicase 41 OS Arabidopsis thaliana GN RH41 PE 2 SV 1
blastp_uniprot_sprot sp|Q0E2Z7|RH41_ORYSJ 138 177 + 40 none 7.46 536 72.50 7e-11 DEAD-box ATP-dependent RNA helicase 41 OS Oryza sativa subsp. japonica GN Os02g0201900 PE 2 SV 2
rpsblast_cdd gnl|CDD|177796 131 177 + 47 Gaps:1 9.27 518 75.00 5e-18 PLN00206 PLN00206 DEAD-box ATP-dependent RNA helicase Provisional.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 232 245 14 PF00098 none Zinc knuckle IPR001878
Coils 331 364 34 Coil none none none
Coils 497 518 22 Coil none none none
SMART 318 354 37 SM01083 none N-terminal domain of CBF1 interacting co-repressor CIR IPR019339
PANTHER 305 368 64 PTHR31861 none none none
ProSiteProfiles 232 245 14 PS50158 none Zinc finger CCHC-type profile. IPR001878
PANTHER 305 368 64 PTHR31861:SF8 none none none
Pfam 147 173 27 PF04438 none HIT zinc finger IPR007529

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

0 Targeting