Protein : Qrob_P0028580.2 Q. robur
Protein Identifier  ? Qrob_P0028580.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) PF12767 - Transcriptional regulator of RNA polII, SAGA, subunit Gene Prediction Quality  validated
Protein length 

Sequence

Length: 358  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0070461 SAGA-type complex A histone acetyltransferase complex that acetylates nucleosomal H3 and H2B and is required for the expression of a subset of Pol II-transcribed genes. The budding yeast complex includes the acetyltransferase Gcn5p, several proteins of the Spt and Ada families, and several TBP-associate proteins (TAFs); analogous complexes in other species have analogous compositions, and usually contain homologs of the yeast proteins.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100256708 1 357 + 357 Gaps:3 100.00 354 76.27 0.0 uncharacterized LOC100256708
blastp_kegg lcl|rcu:RCOM_0174780 1 357 + 357 none 100.00 357 72.27 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_007200 1 357 + 357 Gaps:3 100.00 354 73.73 0.0 hypothetical protein
blastp_kegg lcl|cit:102613591 1 357 + 357 Gaps:4 98.61 360 71.55 7e-180 uncharacterized LOC102613591
blastp_kegg lcl|cic:CICLE_v10028709mg 1 357 + 357 Gaps:4 98.61 360 70.99 8e-178 hypothetical protein
blastp_kegg lcl|pmum:103335199 1 357 + 357 Gaps:4 100.00 357 69.19 1e-177 uncharacterized LOC103335199
blastp_kegg lcl|pper:PRUPE_ppa007726mg 1 357 + 357 Gaps:4 100.00 357 68.91 6e-176 hypothetical protein
blastp_kegg lcl|pop:POPTR_0009s09370g 1 357 + 357 Gaps:12 100.00 345 71.01 2e-174 POPTRDRAFT_202038 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa014746mg 1 357 + 357 Gaps:2 100.00 357 67.79 3e-173 hypothetical protein
blastp_kegg lcl|pmum:103335200 1 357 + 357 Gaps:2 100.00 357 67.23 1e-171 uncharacterized LOC103335200
rpsblast_cdd gnl|CDD|205064 3 285 + 283 Gaps:77 99.05 210 39.42 6e-33 pfam12767 SAGA-Tad1 Transcriptional regulator of RNA polII SAGA subunit. The yeast SAGA complex is a multifunctional coactivator that regulates transcription by RNA polymerase II. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA. The complex can also be conceived of as consisting of two histone-fold-containing core subunits and this family is one of these. As a family it is likely to carry binding regions for interactions with a number of the other components of the complex.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 113 176 64 PTHR21277 none none none
PANTHER 9 82 74 PTHR21277 none none none
Pfam 4 285 282 PF12767 none Transcriptional regulator of RNA polII, SAGA, subunit IPR024738
PANTHER 196 357 162 PTHR21277 none none none
PANTHER 196 357 162 PTHR21277:SF7 none none none
PANTHER 9 82 74 PTHR21277:SF7 none none none
PANTHER 113 176 64 PTHR21277:SF7 none none none

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting