Protein : Qrob_P0028550.2 Q. robur
Protein Identifier  ? Qrob_P0028550.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR10381//PTHR10381:SF9 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT // SUBFAMILY NOT NAMED Code Enzyme  EC:3.4.21.92
Gene Prediction Quality  validated Protein length 

Sequence

Length: 293  
Kegg Orthology  K01358
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0004252 serine-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa006873mg 1 285 + 285 Gaps:7 73.47 392 75.35 1e-156 hypothetical protein
blastp_kegg lcl|pmum:103335102 1 285 + 285 Gaps:7 73.47 392 74.65 1e-155 ATP-dependent Clp protease proteolytic subunit-related protein 1 chloroplastic
blastp_kegg lcl|tcc:TCM_007216 1 285 + 285 Gaps:8 72.85 383 76.70 5e-153 ATP-dependent Clp protease proteolytic subunit
blastp_kegg lcl|pxb:103938798 1 285 + 285 Gaps:7 73.47 392 72.57 1e-147 ATP-dependent Clp protease proteolytic subunit-related protein 1 chloroplastic-like
blastp_kegg lcl|mdm:103445037 1 285 + 285 Gaps:7 73.47 392 71.18 2e-146 ATP-dependent Clp protease proteolytic subunit-related protein 1 chloroplastic
blastp_kegg lcl|pxb:103928094 1 285 + 285 Gaps:13 73.47 392 71.53 2e-146 ATP-dependent Clp protease proteolytic subunit-related protein 1 chloroplastic-like
blastp_kegg lcl|mdm:103428117 1 285 + 285 Gaps:13 73.47 392 70.83 8e-144 ATP-dependent Clp protease proteolytic subunit-related protein 1 chloroplastic-like
blastp_kegg lcl|fve:101315392 28 285 + 258 Gaps:4 70.36 361 76.38 1e-139 ATP-dependent Clp protease proteolytic subunit-related protein 1 chloroplastic-like
blastp_kegg lcl|cmo:103495302 1 285 + 285 Gaps:12 72.56 379 74.55 4e-138 ATP-dependent Clp protease proteolytic subunit-related protein 1 chloroplastic
blastp_kegg lcl|gmx:100806258 29 285 + 257 Gaps:9 67.20 372 77.20 4e-136 ATP-dependent Clp protease proteolytic subunit-related protein 1 chloroplastic-like
blastp_pdb 1yg8_b 170 286 + 117 Gaps:9 55.96 193 44.44 7e-18 mol:protein length:193 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 1yg8_a 170 286 + 117 Gaps:9 55.96 193 44.44 7e-18 mol:protein length:193 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 1yg8_Z 170 286 + 117 Gaps:9 55.96 193 44.44 7e-18 mol:protein length:193 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 1yg8_Y 170 286 + 117 Gaps:9 55.96 193 44.44 7e-18 mol:protein length:193 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 1yg8_X 170 286 + 117 Gaps:9 55.96 193 44.44 7e-18 mol:protein length:193 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 1yg8_W 170 286 + 117 Gaps:9 55.96 193 44.44 7e-18 mol:protein length:193 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 1yg8_V 170 286 + 117 Gaps:9 55.96 193 44.44 7e-18 mol:protein length:193 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 1yg8_U 170 286 + 117 Gaps:9 55.96 193 44.44 7e-18 mol:protein length:193 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 1yg8_T 170 286 + 117 Gaps:9 55.96 193 44.44 7e-18 mol:protein length:193 ATP-dependent Clp protease proteolytic subuni
blastp_pdb 1yg8_S 170 286 + 117 Gaps:9 55.96 193 44.44 7e-18 mol:protein length:193 ATP-dependent Clp protease proteolytic subuni
blastp_uniprot_sprot sp|Q9XJ35|CLPR1_ARATH 1 285 + 285 Gaps:7 73.90 387 66.43 4e-126 ATP-dependent Clp protease proteolytic subunit-related protein 1 chloroplastic OS Arabidopsis thaliana GN CLPR1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8L770|CLPR3_ARATH 144 285 + 142 none 43.03 330 50.70 1e-40 ATP-dependent Clp protease proteolytic subunit-related protein 3 chloroplastic OS Arabidopsis thaliana GN CLPR3 PE 1 SV 1
blastp_uniprot_sprot sp|Q8LB10|CLPR4_ARATH 168 286 + 119 Gaps:1 38.69 305 53.39 6e-34 ATP-dependent Clp protease proteolytic subunit-related protein 4 chloroplastic OS Arabidopsis thaliana GN CLPR4 PE 1 SV 1
blastp_uniprot_sprot sp|P74466|CLPR_SYNY3 165 283 + 119 Gaps:10 57.33 225 48.84 1e-32 Putative ATP-dependent Clp protease proteolytic subunit-like OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN clpR PE 3 SV 1
blastp_uniprot_sprot sp|Q9L4P4|CLPR_SYNE7 179 285 + 107 Gaps:10 51.32 228 47.86 9e-27 Putative ATP-dependent Clp protease proteolytic subunit-like OS Synechococcus elongatus (strain PCC 7942) GN clpR PE 3 SV 1
blastp_uniprot_sprot sp|Q24S49|CLPP2_DESHY 170 286 + 117 Gaps:9 53.47 202 46.30 2e-21 ATP-dependent Clp protease proteolytic subunit 2 OS Desulfitobacterium hafniense (strain Y51) GN clpP2 PE 3 SV 1
blastp_uniprot_sprot sp|B1L812|CLPP_THESQ 170 286 + 117 Gaps:9 53.20 203 49.07 3e-21 ATP-dependent Clp protease proteolytic subunit OS Thermotoga sp. (strain RQ2) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|A5IJ91|CLPP_THEP1 170 286 + 117 Gaps:9 53.20 203 49.07 3e-21 ATP-dependent Clp protease proteolytic subunit OS Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|Q9WZF9|CLPP_THEMA 170 286 + 117 Gaps:9 53.20 203 49.07 3e-21 ATP-dependent Clp protease proteolytic subunit OS Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN clpP PE 3 SV 1
blastp_uniprot_sprot sp|B0K533|CLPP_THEPX 170 286 + 117 Gaps:9 55.38 195 48.15 6e-21 ATP-dependent Clp protease proteolytic subunit OS Thermoanaerobacter sp. (strain X514) GN clpP PE 3 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 166 286 121 SSF52096 none none IPR029045
PANTHER 107 285 179 PTHR10381 none none IPR023562
PRINTS 210 230 21 PR00127 none Clp protease catalytic subunit P signature IPR001907
PRINTS 271 290 20 PR00127 none Clp protease catalytic subunit P signature IPR001907
PRINTS 170 185 16 PR00127 none Clp protease catalytic subunit P signature IPR001907
PRINTS 250 267 18 PR00127 none Clp protease catalytic subunit P signature IPR001907
PANTHER 107 285 179 PTHR10381:SF9 none none none
Gene3D 166 286 121 G3DSA:3.90.226.10 none none IPR029045
Pfam 172 287 116 PF00574 none Clp protease IPR023562

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting