Protein : Qrob_P0028290.2 Q. robur
Protein Identifier  ? Qrob_P0028290.2 Organism . Name  Quercus robur
Score  79.0 Score Type  egn
Protein Description  (M=3) PTHR11432:SF6 - NADH DEHYDROGENASE SUBUNIT 1 Code Enzyme  EC:1.6.5.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 279  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MTR_1g006260 21 127 + 107 none 10.74 996 94.39 1e-59 Maturase
blastp_kegg lcl|rcu:RCOM_Mp09 51 128 + 78 none 24.00 325 100.00 2e-44 nad1 NADH dehydrogenase subunit 1
blastp_kegg lcl|gmx:15308632 51 127 + 77 none 23.69 325 97.40 2e-42 nad1 GlmaxMp20 NADH dehydrogenase subunit 1
blastp_kegg lcl|mdm:13630238 51 127 + 77 none 23.26 331 98.70 2e-42 nad1 C3258_p23 NADH dehydrogenase subunit 1
blastp_kegg lcl|csv:11123890 51 127 + 77 none 23.69 325 97.40 5e-42 nad1 CusaM_p04 NADH dehydrogenase subunit 1
blastp_kegg lcl|ath:ArthMp044 51 128 + 78 none 24.00 325 93.59 3e-41 nad1 NADH dehydrogenase subunit 1
blastp_kegg lcl|pda:11542581 51 127 + 77 none 23.55 327 96.10 5e-39 nad1 DP_nd1 NADH dehydrogenase subunit 1
blastp_kegg lcl|sbi:SobioMp01 51 127 + 77 none 23.69 325 93.51 8e-39 nad1 NADH dehydrogenase subunit 1
blastp_kegg lcl|vvi:7498511 51 128 + 78 none 23.85 327 93.59 1e-38 nad1 ViviM_p002 NADH dehydrogenase subunit 1
blastp_kegg lcl|osa:6450162 51 128 + 78 none 24.00 325 85.90 7e-34 nad1 OrsajM_p01 NADH dehydrogenase subunit 1
blastp_uniprot_sprot sp|Q01300|NU1M_PETHY 51 128 + 78 none 24.00 325 97.44 3e-43 NADH-ubiquinone oxidoreductase chain 1 OS Petunia hybrida GN ND1 PE 3 SV 1
blastp_uniprot_sprot sp|Q01148|NU1M_WHEAT 51 127 + 77 none 23.69 325 89.61 3e-37 NADH-ubiquinone oxidoreductase chain 1 OS Triticum aestivum GN ND1 PE 2 SV 1
blastp_uniprot_sprot sp|P31839|NU1M_OENBE 51 128 + 78 none 23.56 331 88.46 1e-36 NADH-ubiquinone oxidoreductase chain 1 OS Oenothera berteroana GN ND1 PE 2 SV 1
blastp_uniprot_sprot sp|P92558|NU1M_ARATH 51 128 + 78 none 24.00 325 84.62 2e-35 NADH-ubiquinone oxidoreductase chain 1 OS Arabidopsis thaliana GN ND1 PE 1 SV 4
blastp_uniprot_sprot sp|P26845|NU1M_MARPO 53 128 + 76 none 23.17 328 81.58 3e-32 NADH-ubiquinone oxidoreductase chain 1 OS Marchantia polymorpha GN ND1 PE 3 SV 2
blastp_uniprot_sprot sp|Q3YS40|NUOH_EHRCJ 59 148 + 90 Gaps:3 23.58 369 55.17 3e-20 NADH-quinone oxidoreductase subunit H OS Ehrlichia canis (strain Jake) GN nuoH PE 3 SV 1
blastp_uniprot_sprot sp|Q73IK1|NUOH_WOLPM 59 128 + 70 none 20.53 341 58.57 3e-20 NADH-quinone oxidoreductase subunit H OS Wolbachia pipientis wMel GN nuoH PE 3 SV 1
blastp_uniprot_sprot sp|P48899|NU1M_CYACA 54 128 + 75 none 21.80 344 60.00 4e-20 NADH-ubiquinone oxidoreductase chain 1 OS Cyanidium caldarium GN ND1 PE 3 SV 1
blastp_uniprot_sprot sp|Q5GSR1|NUOH_WOLTR 59 131 + 73 none 21.41 341 57.53 5e-20 NADH-quinone oxidoreductase subunit H OS Wolbachia sp. subsp. Brugia malayi (strain TRS) GN nuoH PE 3 SV 2
blastp_uniprot_sprot sp|Q5PAQ2|NUOH_ANAMM 59 128 + 70 none 19.89 352 61.43 1e-19 NADH-quinone oxidoreductase subunit H OS Anaplasma marginale (strain St. Maries) GN nuoH PE 3 SV 1
rpsblast_cdd gnl|CDD|109212 53 128 + 76 Gaps:5 22.98 309 54.93 2e-21 pfam00146 NADHdh NADH dehydrogenase.
rpsblast_cdd gnl|CDD|180386 59 127 + 69 Gaps:2 20.81 322 58.21 2e-20 PRK06076 PRK06076 NADH:ubiquinone oxidoreductase subunit H Provisional.
rpsblast_cdd gnl|CDD|177127 59 128 + 70 Gaps:2 20.99 324 54.41 3e-17 MTH00054 ND1 NADH dehydrogenase subunit 1 Provisional.
rpsblast_cdd gnl|CDD|164761 59 128 + 70 Gaps:6 20.18 327 56.06 9e-17 MTH00216 ND1 NADH dehydrogenase subunit 1 Provisional.
rpsblast_cdd gnl|CDD|31209 59 128 + 70 Gaps:1 20.78 332 43.48 2e-15 COG1005 NuoH NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion].
rpsblast_cdd gnl|CDD|177201 75 119 + 45 none 14.66 307 57.78 1e-14 MTH00143 ND1 NADH dehydrogenase subunit 1 Provisional.
rpsblast_cdd gnl|CDD|177241 74 118 + 45 none 14.71 306 53.33 3e-12 MTH00193 ND1 NADH dehydrogenase subunit 1 Provisional.
rpsblast_cdd gnl|CDD|177261 76 128 + 53 none 17.38 305 47.17 9e-12 MTH00225 ND1 NADH dehydrogenase subunit 1 Provisional.
rpsblast_cdd gnl|CDD|177108 59 128 + 70 Gaps:11 23.62 343 40.74 1e-11 MTH00029 ND1 NADH dehydrogenase subunit 1 Provisional.
rpsblast_cdd gnl|CDD|177115 59 132 + 74 Gaps:4 21.67 323 41.43 6e-11 MTH00040 ND1 NADH dehydrogenase subunit 1 Validated.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 51 137 87 PTHR11432:SF6 none none none
Phobius 77 97 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 51 137 87 PTHR11432 none none IPR001694
Pfam 56 126 71 PF00146 none NADH dehydrogenase IPR001694
Phobius 98 278 181 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 76 76 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

1 Localization

Analysis Start End Length
TMHMM 75 97 22

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting