Protein : Qrob_P0027080.2 Q. robur
Protein Identifier  ? Qrob_P0027080.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=84) PF00646//PF08268 - F-box domain // F-box associated domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 407  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sly:101257310 22 405 + 384 Gaps:63 96.36 385 34.50 9e-43 F-box protein At3g07870-like
blastp_kegg lcl|sot:102592783 22 405 + 384 Gaps:68 96.35 384 32.97 1e-40 F-box/kelch-repeat protein At3g06240-like
blastp_kegg lcl|pxb:103928849 22 399 + 378 Gaps:40 96.59 381 34.51 2e-40 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|fve:101302682 20 399 + 380 Gaps:45 97.32 373 34.71 2e-40 F-box protein At3g07870-like
blastp_kegg lcl|pxb:103940907 22 399 + 378 Gaps:40 96.59 381 34.51 3e-40 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|tcc:TCM_031361 20 399 + 380 Gaps:61 91.71 398 35.07 2e-38 F-box and associated interaction domains-containing protein putative isoform 1
blastp_kegg lcl|mdm:103426160 22 399 + 378 Gaps:58 96.59 381 36.41 4e-38 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|mdm:103405650 22 399 + 378 Gaps:58 96.59 381 36.41 4e-38 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|fve:101293054 22 399 + 378 Gaps:56 96.11 360 35.26 4e-38 F-box/kelch-repeat protein At3g06240-like
blastp_kegg lcl|tcc:TCM_001772 20 405 + 386 Gaps:75 96.33 381 35.97 7e-38 F-box and associated interaction domains-containing-like protein
blastp_uniprot_sprot sp|Q8GXC7|FBK50_ARATH 10 395 + 386 Gaps:112 94.61 427 27.48 1e-25 F-box/kelch-repeat protein At3g06240 OS Arabidopsis thaliana GN At3g06240 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LIR8|FBK67_ARATH 21 346 + 326 Gaps:73 84.34 364 34.20 2e-25 F-box/kelch-repeat protein At3g23880 OS Arabidopsis thaliana GN At3g23880 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SU30|CPR30_ARATH 22 325 + 304 Gaps:49 71.91 413 30.98 3e-21 F-box protein CPR30 OS Arabidopsis thaliana GN CPR30 PE 1 SV 2
blastp_uniprot_sprot sp|Q9C9Y4|FB136_ARATH 22 271 + 250 Gaps:43 59.35 369 31.05 3e-20 F-box protein At3g08750 OS Arabidopsis thaliana GN At3g08750 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SFC7|FB135_ARATH 20 324 + 305 Gaps:52 71.70 417 30.43 2e-19 F-box protein At3g07870 OS Arabidopsis thaliana GN At3g07870 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SUY0|FB244_ARATH 21 325 + 305 Gaps:47 73.13 402 27.89 2e-16 F-box protein At4g22390 OS Arabidopsis thaliana GN At4g22390 PE 2 SV 3
blastp_uniprot_sprot sp|Q3ECE2|FB85_ARATH 20 327 + 308 Gaps:40 77.51 369 28.32 6e-16 Putative F-box protein At1g70960 OS Arabidopsis thaliana GN At1g70960 PE 4 SV 1
blastp_uniprot_sprot sp|Q9FGY4|FB341_ARATH 4 327 + 324 Gaps:77 82.17 359 31.86 1e-15 F-box protein At5g49610 OS Arabidopsis thaliana GN At5g49610 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FZF8|FB44_ARATH 16 295 + 280 Gaps:36 65.30 389 30.71 6e-15 Putative F-box protein At1g47790 OS Arabidopsis thaliana GN At1g47790 PE 4 SV 1
blastp_uniprot_sprot sp|Q9SXA0|FB42_ARATH 22 346 + 325 Gaps:64 78.01 391 32.13 2e-14 Putative F-box protein At1g47730 OS Arabidopsis thaliana GN At1g47730 PE 4 SV 1
rpsblast_cdd gnl|CDD|162458 125 341 + 217 Gaps:39 86.96 230 30.50 1e-21 TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646) a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 19 326 308 PTHR32133 none none none
SMART 22 62 41 SM00256 none A Receptor for Ubiquitination Targets IPR001810
PANTHER 19 326 308 PTHR32133:SF79 none none none
Gene3D 20 58 39 G3DSA:1.20.1280.50 none none none
SUPERFAMILY 20 68 49 SSF81383 none none IPR001810
Pfam 251 324 74 PF08268 none F-box associated domain IPR013187
TIGRFAM 126 340 215 TIGR01640 none F_box_assoc_1: F-box protein interaction domain IPR017451
Pfam 21 58 38 PF00646 none F-box domain IPR001810
ProSiteProfiles 16 62 47 PS50181 none F-box domain profile. IPR001810

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting