Protein : Qrob_P0027070.2 Q. robur
Protein Identifier  ? Qrob_P0027070.2 Organism . Name  Quercus robur
Score  17.2 Score Type  egn
Protein Description  (M=302) PF00646 - F-box domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 385  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sly:101267558 24 374 + 351 Gaps:55 97.64 381 33.06 2e-32 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|sly:101257310 53 383 + 331 Gaps:83 95.58 385 31.79 4e-32 F-box protein At3g07870-like
blastp_kegg lcl|sot:102592783 52 383 + 332 Gaps:86 95.83 384 31.25 1e-31 F-box/kelch-repeat protein At3g06240-like
blastp_kegg lcl|rcu:RCOM_0174350 52 378 + 327 Gaps:77 94.99 379 32.78 2e-31 hypothetical protein
blastp_kegg lcl|fve:101293054 52 377 + 326 Gaps:80 95.56 360 33.43 5e-31 F-box/kelch-repeat protein At3g06240-like
blastp_kegg lcl|mtr:MTR_8g073550 53 247 + 195 Gaps:16 81.62 234 40.84 5e-31 F-box family protein
blastp_kegg lcl|rcu:RCOM_0822970 49 339 + 291 Gaps:82 92.45 371 31.78 9e-31 hypothetical protein
blastp_kegg lcl|sot:102602147 53 327 + 275 Gaps:68 82.19 393 32.20 2e-30 F-box protein At3g07870-like
blastp_kegg lcl|pxb:103928551 52 377 + 326 Gaps:68 98.04 357 34.00 4e-30 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|sot:102585877 49 373 + 325 Gaps:72 87.31 402 32.76 6e-30 F-box/kelch-repeat protein At3g23880-like
blastp_uniprot_sprot sp|Q9LIR8|FBK67_ARATH 46 374 + 329 Gaps:95 96.15 364 30.00 2e-21 F-box/kelch-repeat protein At3g23880 OS Arabidopsis thaliana GN At3g23880 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SU30|CPR30_ARATH 53 239 + 187 Gaps:34 44.31 413 32.79 2e-13 F-box protein CPR30 OS Arabidopsis thaliana GN CPR30 PE 1 SV 2
blastp_uniprot_sprot sp|Q9S9V1|FBX15_ARATH 48 239 + 192 Gaps:23 47.35 378 32.96 5e-12 Putative F-box only protein 15 OS Arabidopsis thaliana GN FBX15 PE 4 SV 1
blastp_uniprot_sprot sp|Q8GXC7|FBK50_ARATH 53 302 + 250 Gaps:129 74.24 427 25.87 5e-12 F-box/kelch-repeat protein At3g06240 OS Arabidopsis thaliana GN At3g06240 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FZF8|FB44_ARATH 53 245 + 193 Gaps:37 46.79 389 35.71 9e-12 Putative F-box protein At1g47790 OS Arabidopsis thaliana GN At1g47790 PE 4 SV 1
blastp_uniprot_sprot sp|Q9C9Y4|FB136_ARATH 53 236 + 184 Gaps:27 45.26 369 32.93 1e-11 F-box protein At3g08750 OS Arabidopsis thaliana GN At3g08750 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LU24|FB145_ARATH 50 210 + 161 Gaps:34 39.72 360 36.36 3e-11 Putative F-box protein At3g16210 OS Arabidopsis thaliana GN At3g16210 PE 4 SV 1
blastp_uniprot_sprot sp|Q9ZPS1|FB94_ARATH 24 238 + 215 Gaps:48 69.76 334 28.33 8e-11 Putative F-box protein At2g02030 OS Arabidopsis thaliana GN At2g02030 PE 4 SV 1
blastp_uniprot_sprot sp|Q9SFC7|FB135_ARATH 49 301 + 253 Gaps:81 71.46 417 25.84 2e-08 F-box protein At3g07870 OS Arabidopsis thaliana GN At3g07870 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LNF6|FB48_ARATH 53 239 + 187 Gaps:34 48.49 365 29.94 2e-08 F-box protein At1g48060 OS Arabidopsis thaliana GN At1g48060 PE 2 SV 3
rpsblast_cdd gnl|CDD|162458 150 318 + 169 Gaps:53 86.96 230 25.00 1e-15 TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646) a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 50 96 47 SSF81383 none none IPR001810
Pfam 20 47 28 PF00646 none F-box domain IPR001810
Pfam 52 88 37 PF00646 none F-box domain IPR001810
ProSiteProfiles 16 62 47 PS50181 none F-box domain profile. IPR001810
SMART 50 90 41 SM00256 none A Receptor for Ubiquitination Targets IPR001810
TIGRFAM 151 242 92 TIGR01640 none F_box_assoc_1: F-box protein interaction domain IPR017451
Gene3D 16 48 33 G3DSA:1.20.1280.50 none none none
Gene3D 49 85 37 G3DSA:1.20.1280.50 none none none
PANTHER 52 238 187 PTHR32133 none none none
SUPERFAMILY 17 48 32 SSF81383 none none IPR001810

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 42   Mitochondrion 4 0.081 0.562 NON-PLANT 42