Protein : Qrob_P0027060.2 Q. robur
Protein Identifier  ? Qrob_P0027060.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=55) PF00646//PF07734 - F-box domain // F-box associated Gene Prediction Quality  validated
Protein length 

Sequence

Length: 406  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sly:101257310 23 404 + 382 Gaps:47 96.36 385 34.77 1e-50 F-box protein At3g07870-like
blastp_kegg lcl|sot:102592783 23 404 + 382 Gaps:56 96.35 384 33.78 2e-48 F-box/kelch-repeat protein At3g06240-like
blastp_kegg lcl|rcu:RCOM_0174350 23 400 + 378 Gaps:57 95.78 379 36.91 3e-48 hypothetical protein
blastp_kegg lcl|sot:102602147 26 345 + 320 Gaps:55 82.19 393 36.53 6e-46 F-box protein At3g07870-like
blastp_kegg lcl|fve:101311973 23 403 + 381 Gaps:59 97.44 390 35.00 8e-45 F-box protein CPR30-like
blastp_kegg lcl|pxb:103940907 23 354 + 332 Gaps:39 88.98 381 36.28 8e-44 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|pxb:103928849 23 354 + 332 Gaps:39 88.98 381 35.99 9e-44 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|tcc:TCM_031361 23 320 + 298 Gaps:46 74.37 398 36.82 1e-43 F-box and associated interaction domains-containing protein putative isoform 1
blastp_kegg lcl|mdm:103426160 23 350 + 328 Gaps:39 87.93 381 35.82 2e-42 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|mdm:103405650 23 350 + 328 Gaps:39 87.93 381 35.82 2e-42 F-box/kelch-repeat protein At3g23880-like
blastp_uniprot_sprot sp|Q9LIR8|FBK67_ARATH 19 324 + 306 Gaps:33 79.95 364 33.33 3e-29 F-box/kelch-repeat protein At3g23880 OS Arabidopsis thaliana GN At3g23880 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GXC7|FBK50_ARATH 14 322 + 309 Gaps:58 77.52 427 27.79 4e-26 F-box/kelch-repeat protein At3g06240 OS Arabidopsis thaliana GN At3g06240 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LU24|FB145_ARATH 23 342 + 320 Gaps:55 81.94 360 31.53 2e-23 Putative F-box protein At3g16210 OS Arabidopsis thaliana GN At3g16210 PE 4 SV 1
blastp_uniprot_sprot sp|Q9SU30|CPR30_ARATH 23 323 + 301 Gaps:53 72.64 413 28.67 1e-20 F-box protein CPR30 OS Arabidopsis thaliana GN CPR30 PE 1 SV 2
blastp_uniprot_sprot sp|Q9C9Y4|FB136_ARATH 23 364 + 342 Gaps:75 85.37 369 29.21 8e-20 F-box protein At3g08750 OS Arabidopsis thaliana GN At3g08750 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SUY0|FB244_ARATH 24 349 + 326 Gaps:64 79.60 402 28.12 3e-19 F-box protein At4g22390 OS Arabidopsis thaliana GN At4g22390 PE 2 SV 3
blastp_uniprot_sprot sp|Q9SFC7|FB135_ARATH 23 329 + 307 Gaps:64 73.14 417 30.16 6e-19 F-box protein At3g07870 OS Arabidopsis thaliana GN At3g07870 PE 2 SV 1
blastp_uniprot_sprot sp|Q4PSN6|FBW1_ARATH 5 384 + 380 Gaps:55 88.05 410 26.59 8e-18 F-box/WD-40 repeat-containing protein 1 OS Arabidopsis thaliana GN FBW1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CAE7|FB138_ARATH 23 271 + 249 Gaps:48 60.81 370 34.22 2e-17 Putative F-box protein At3g10430 OS Arabidopsis thaliana GN At3g10430 PE 4 SV 1
blastp_uniprot_sprot sp|Q9FZF8|FB44_ARATH 13 294 + 282 Gaps:50 65.81 389 30.47 3e-17 Putative F-box protein At1g47790 OS Arabidopsis thaliana GN At1g47790 PE 4 SV 1
rpsblast_cdd gnl|CDD|162458 124 336 + 213 Gaps:31 86.96 230 31.00 7e-25 TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646) a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
rpsblast_cdd gnl|CDD|201368 23 65 + 43 none 89.58 48 41.86 8e-07 pfam00646 F-box F-box domain. This domain is approximately 50 amino acids long and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts such as polyubiquitination transcription elongation centromere binding and translational repression.
rpsblast_cdd gnl|CDD|197608 23 59 + 37 none 90.24 41 48.65 9e-07 smart00256 FBOX A Receptor for Ubiquitination Targets.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 23 59 37 G3DSA:1.20.1280.50 none none none
SMART 23 63 41 SM00256 none A Receptor for Ubiquitination Targets IPR001810
SUPERFAMILY 23 105 83 SSF81383 none none IPR001810
ProSiteProfiles 17 63 47 PS50181 none F-box domain profile. IPR001810
TIGRFAM 125 366 242 TIGR01640 none F_box_assoc_1: F-box protein interaction domain IPR017451
Pfam 23 60 38 PF00646 none F-box domain IPR001810
Pfam 233 368 136 PF07734 none F-box associated IPR006527
PANTHER 23 331 309 PTHR32133 none none none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting