Protein : Qrob_P0027050.2 Q. robur
Protein Identifier  ? Qrob_P0027050.2 Organism . Name  Quercus robur
Score  29.4 Score Type  egn
Protein Description  (M=84) PF00646//PF08268 - F-box domain // F-box associated domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 385  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sly:101257310 21 382 + 362 Gaps:61 96.36 385 35.85 3e-51 F-box protein At3g07870-like
blastp_kegg lcl|sot:102592783 21 382 + 362 Gaps:54 96.35 384 36.49 1e-50 F-box/kelch-repeat protein At3g06240-like
blastp_kegg lcl|pxb:103933891 15 377 + 363 Gaps:53 98.06 361 36.72 3e-47 F-box/kelch-repeat protein At3g06240-like
blastp_kegg lcl|mdm:103444379 15 377 + 363 Gaps:59 98.06 361 37.29 2e-46 F-box/kelch-repeat protein At3g06240-like
blastp_kegg lcl|pxb:103928849 19 384 + 366 Gaps:52 99.21 381 34.66 3e-46 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|tcc:TCM_031361 19 377 + 359 Gaps:69 91.96 398 36.61 2e-45 F-box and associated interaction domains-containing protein putative isoform 1
blastp_kegg lcl|pxb:103940907 21 384 + 364 Gaps:52 98.69 381 34.57 4e-45 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|mdm:103411840 19 377 + 359 Gaps:51 98.31 354 37.07 1e-44 F-box/kelch-repeat protein At3g06240-like
blastp_kegg lcl|mdm:103426160 19 384 + 366 Gaps:58 99.21 381 34.66 1e-44 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|mdm:103405650 19 384 + 366 Gaps:58 99.21 381 34.66 1e-44 F-box/kelch-repeat protein At3g23880-like
blastp_uniprot_sprot sp|Q8GXC7|FBK50_ARATH 22 373 + 352 Gaps:112 89.46 427 28.80 1e-26 F-box/kelch-repeat protein At3g06240 OS Arabidopsis thaliana GN At3g06240 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LIR8|FBK67_ARATH 21 339 + 319 Gaps:51 89.01 364 30.25 1e-25 F-box/kelch-repeat protein At3g23880 OS Arabidopsis thaliana GN At3g23880 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SFC7|FB135_ARATH 22 301 + 280 Gaps:55 71.22 417 31.65 6e-25 F-box protein At3g07870 OS Arabidopsis thaliana GN At3g07870 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SU30|CPR30_ARATH 22 302 + 281 Gaps:62 71.91 413 31.31 8e-23 F-box protein CPR30 OS Arabidopsis thaliana GN CPR30 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SUY0|FB244_ARATH 20 306 + 287 Gaps:56 74.38 402 28.43 4e-20 F-box protein At4g22390 OS Arabidopsis thaliana GN At4g22390 PE 2 SV 3
blastp_uniprot_sprot sp|Q9SXA0|FB42_ARATH 22 323 + 302 Gaps:63 78.01 391 30.49 5e-20 Putative F-box protein At1g47730 OS Arabidopsis thaliana GN At1g47730 PE 4 SV 1
blastp_uniprot_sprot sp|Q9C9Y4|FB136_ARATH 22 247 + 226 Gaps:33 59.35 369 32.42 6e-19 F-box protein At3g08750 OS Arabidopsis thaliana GN At3g08750 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LU24|FB145_ARATH 22 311 + 290 Gaps:49 75.28 360 31.00 6e-19 Putative F-box protein At3g16210 OS Arabidopsis thaliana GN At3g16210 PE 4 SV 1
blastp_uniprot_sprot sp|Q9FZF8|FB44_ARATH 14 292 + 279 Gaps:65 70.44 389 31.75 2e-17 Putative F-box protein At1g47790 OS Arabidopsis thaliana GN At1g47790 PE 4 SV 1
blastp_uniprot_sprot sp|Q9LJC0|FB170_ARATH 21 275 + 255 Gaps:47 72.48 367 27.07 3e-15 Putative F-box protein At3g21120 OS Arabidopsis thaliana GN At3g21120 PE 4 SV 1
rpsblast_cdd gnl|CDD|162458 97 317 + 221 Gaps:34 86.52 230 30.15 3e-23 TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646) a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
rpsblast_cdd gnl|CDD|201368 20 64 + 45 none 93.75 48 37.78 2e-07 pfam00646 F-box F-box domain. This domain is approximately 50 amino acids long and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts such as polyubiquitination transcription elongation centromere binding and translational repression.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 365 383 19 PTHR32133 none none none
PANTHER 2 314 313 PTHR32133 none none none
Pfam 227 301 75 PF08268 none F-box associated domain IPR013187
SUPERFAMILY 17 93 77 SSF81383 none none IPR001810
SMART 22 62 41 SM00256 none A Receptor for Ubiquitination Targets IPR001810
TIGRFAM 98 347 250 TIGR01640 none F_box_assoc_1: F-box protein interaction domain IPR017451
PANTHER 365 383 19 PTHR32133:SF79 none none none
PANTHER 2 314 313 PTHR32133:SF79 none none none
Gene3D 16 57 42 G3DSA:1.20.1280.50 none none none
ProSiteProfiles 16 63 48 PS50181 none F-box domain profile. IPR001810
Pfam 20 59 40 PF00646 none F-box domain IPR001810

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 42   Mitochondrion 5 0.062 0.514 NON-PLANT 42