Protein : Qrob_P0027040.2 Q. robur
Protein Identifier  ? Qrob_P0027040.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=84) PF00646//PF08268 - F-box domain // F-box associated domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 372  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sot:102592783 21 370 + 350 Gaps:36 96.35 384 34.05 3e-40 F-box/kelch-repeat protein At3g06240-like
blastp_kegg lcl|sly:101257310 21 370 + 350 Gaps:39 96.36 385 33.69 2e-39 F-box protein At3g07870-like
blastp_kegg lcl|sot:102579980 21 295 + 275 Gaps:47 70.22 413 38.97 6e-39 F-box protein At3g07870-like
blastp_kegg lcl|tcc:TCM_031361 21 366 + 346 Gaps:67 91.71 398 33.42 1e-38 F-box and associated interaction domains-containing protein putative isoform 1
blastp_kegg lcl|pxb:103928849 21 296 + 276 Gaps:45 75.33 381 36.59 7e-35 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|rcu:RCOM_0174350 21 296 + 276 Gaps:35 76.25 379 36.68 9e-35 hypothetical protein
blastp_kegg lcl|pxb:103945397 21 296 + 276 Gaps:32 76.22 370 37.23 2e-34 F-box protein At3g07870-like
blastp_kegg lcl|pxb:103940907 21 296 + 276 Gaps:45 75.33 381 36.24 3e-34 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|tcc:TCM_046272 20 296 + 277 Gaps:35 78.99 357 34.40 3e-34 F-box family protein
blastp_kegg lcl|pmum:103325822 21 371 + 351 Gaps:63 90.32 434 29.34 4e-34 F-box/kelch-repeat protein At3g23880-like
blastp_uniprot_sprot sp|Q9LIR8|FBK67_ARATH 20 306 + 287 Gaps:54 81.04 364 31.53 2e-18 F-box/kelch-repeat protein At3g23880 OS Arabidopsis thaliana GN At3g23880 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LU24|FB145_ARATH 21 313 + 293 Gaps:50 76.39 360 29.09 1e-17 Putative F-box protein At3g16210 OS Arabidopsis thaliana GN At3g16210 PE 4 SV 1
blastp_uniprot_sprot sp|Q8GXC7|FBK50_ARATH 14 295 + 282 Gaps:105 77.05 427 27.36 1e-17 F-box/kelch-repeat protein At3g06240 OS Arabidopsis thaliana GN At3g06240 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SFC7|FB135_ARATH 21 296 + 276 Gaps:53 69.78 417 28.18 1e-14 F-box protein At3g07870 OS Arabidopsis thaliana GN At3g07870 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SU30|CPR30_ARATH 21 296 + 276 Gaps:56 70.22 413 26.90 4e-14 F-box protein CPR30 OS Arabidopsis thaliana GN CPR30 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FLS0|FB253_ARATH 4 255 + 252 Gaps:62 63.33 420 30.08 3e-13 F-box protein At5g07610 OS Arabidopsis thaliana GN At5g07610 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FGY4|FB341_ARATH 22 294 + 273 Gaps:53 75.21 359 27.78 7e-13 F-box protein At5g49610 OS Arabidopsis thaliana GN At5g49610 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LV12|FB299_ARATH 20 338 + 319 Gaps:56 85.75 379 26.46 7e-13 Putative F-box protein At5g62660 OS Arabidopsis thaliana GN At5g62660 PE 4 SV 1
blastp_uniprot_sprot sp|Q9ZPS1|FB94_ARATH 12 254 + 243 Gaps:71 82.04 334 27.74 8e-13 Putative F-box protein At2g02030 OS Arabidopsis thaliana GN At2g02030 PE 4 SV 1
blastp_uniprot_sprot sp|Q9FZF8|FB44_ARATH 13 272 + 260 Gaps:32 65.30 389 27.95 9e-13 Putative F-box protein At1g47790 OS Arabidopsis thaliana GN At1g47790 PE 4 SV 1
rpsblast_cdd gnl|CDD|162458 116 295 + 180 Gaps:27 76.96 230 26.55 1e-12 TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646) a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
rpsblast_cdd gnl|CDD|201368 20 63 + 44 none 91.67 48 40.91 8e-07 pfam00646 F-box F-box domain. This domain is approximately 50 amino acids long and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts such as polyubiquitination transcription elongation centromere binding and translational repression.
rpsblast_cdd gnl|CDD|197608 21 57 + 37 none 90.24 41 51.35 1e-06 smart00256 FBOX A Receptor for Ubiquitination Targets.

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 18 55 38 G3DSA:1.20.1280.50 none none none
TIGRFAM 118 294 177 TIGR01640 none F_box_assoc_1: F-box protein interaction domain IPR017451
SMART 21 61 41 SM00256 none A Receptor for Ubiquitination Targets IPR001810
ProSiteProfiles 15 65 51 PS50181 none F-box domain profile. IPR001810
Pfam 20 58 39 PF00646 none F-box domain IPR001810
PANTHER 1 294 294 PTHR32133 none none none
Pfam 231 293 63 PF08268 none F-box associated domain IPR013187
PANTHER 1 294 294 PTHR32133:SF79 none none none
SUPERFAMILY 19 74 56 SSF81383 none none IPR001810

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting