Protein : Qrob_P0027030.2 Q. robur
Protein Identifier  ? Qrob_P0027030.2 Organism . Name  Quercus robur
Score  92.0 Score Type  egn
Protein Description  (M=1) PTHR23160//PTHR23160:SF2 - MYOSIN HEAVY CHAIN-RELATED // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 846  
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Protein Sequence Displayer

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0 Synonyms

0 GO Terms

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_025519 1 845 + 845 Gaps:7 100.00 844 80.57 0.0 hypothetical protein
blastp_kegg lcl|pmum:103333480 11 845 + 835 Gaps:4 98.59 851 78.43 0.0 WEB family protein At3g02930 chloroplastic-like
blastp_kegg lcl|rcu:RCOM_1327430 1 845 + 845 Gaps:4 100.00 841 76.93 0.0 ATP binding protein putative
blastp_kegg lcl|cit:102606891 1 845 + 845 Gaps:26 100.00 869 75.14 0.0 WEB family protein At5g16730 chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10030659mg 6 845 + 840 Gaps:26 95.79 902 75.23 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0013s07650g 9 845 + 837 Gaps:15 100.00 850 75.29 0.0 POPTRDRAFT_242358 hypothetical protein
blastp_kegg lcl|vvi:100249386 1 845 + 845 Gaps:5 100.00 846 74.94 0.0 uncharacterized LOC100249386
blastp_kegg lcl|pop:POPTR_0019s07200g 1 845 + 845 Gaps:6 100.00 847 74.85 0.0 POPTRDRAFT_665371 hypothetical protein
blastp_kegg lcl|mdm:103406618 1 845 + 845 Gaps:12 99.88 852 74.85 0.0 WEB family protein At3g02930 chloroplastic-like
blastp_kegg lcl|mdm:103444996 1 845 + 845 Gaps:12 99.88 852 74.97 0.0 WEB family protein At3g02930 chloroplastic
blastp_uniprot_sprot sp|Q9LFE4|Y5673_ARATH 18 845 + 828 Gaps:34 97.30 853 55.90 0.0 WEB family protein At5g16730 chloroplastic OS Arabidopsis thaliana GN At5g16730 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M8T5|Y3293_ARATH 1 845 + 845 Gaps:63 100.00 806 57.32 0.0 WEB family protein At3g02930 chloroplastic OS Arabidopsis thaliana GN At3g02930 PE 2 SV 1
blastp_uniprot_sprot sp|F4I8B9|Y1501_ARATH 1 836 + 836 Gaps:34 65.65 1345 55.15 0.0 Putative WEB family protein At1g65010 chloroplastic OS Arabidopsis thaliana GN At1g65010 PE 1 SV 1
blastp_uniprot_sprot sp|F4JJP1|Y4759_ARATH 1 842 + 842 Gaps:72 80.02 1221 47.49 0.0 WEB family protein At4g27595 chloroplastic OS Arabidopsis thaliana GN At4g27595 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZQC5|ICR2_ARATH 11 213 + 203 Gaps:32 30.02 583 45.14 1e-18 Interactor of constitutive active ROPs 2 chloroplastic OS Arabidopsis thaliana GN ICR2 PE 1 SV 1
blastp_uniprot_sprot sp|Q8VYU8|ICR5_ARATH 20 202 + 183 Gaps:33 42.93 396 37.65 1e-08 Interactor of constitutive active ROPs 5 OS Arabidopsis thaliana GN ICR5 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LSS5|ICR3_ARATH 4 500 + 497 Gaps:77 80.85 564 29.61 4e-07 Interactor of constitutive active ROPs 3 OS Arabidopsis thaliana GN ICR3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SZB6|WEL1_ARATH 12 413 + 402 Gaps:51 54.04 779 26.84 7e-06 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS Arabidopsis thaliana GN WEL1 PE 2 SV 1
rpsblast_cdd gnl|CDD|162739 64 760 + 697 Gaps:312 71.08 1179 55.73 2e-12 TIGR02168 SMC_prok_B chromosome segregation protein SMC common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
rpsblast_cdd gnl|CDD|173412 63 791 + 729 Gaps:115 40.02 2084 41.25 7e-11 PTZ00121 PTZ00121 MAEBL Provisional.
rpsblast_cdd gnl|CDD|31389 60 807 + 748 Gaps:122 73.60 1163 47.20 2e-10 COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning].
rpsblast_cdd gnl|CDD|162740 261 620 + 360 Gaps:35 60.05 1164 20.74 1e-09 TIGR02169 SMC_prok_A chromosome segregation protein SMC primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes but six paralogs (excluded from this family) are found in eukarotes where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex Synechocystis etc) the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved but the central hinge region is skewed in composition and highly divergent.
rpsblast_cdd gnl|CDD|179385 81 657 + 577 Gaps:93 62.05 880 23.99 5e-08 PRK02224 PRK02224 chromosome segregation protein Provisional.
rpsblast_cdd gnl|CDD|204830 84 415 + 332 Gaps:37 29.30 1198 21.08 3e-07 pfam12128 DUF3584 Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
rpsblast_kog gnl|CDD|35383 60 667 + 608 Gaps:241 46.68 1930 46.73 5e-16 KOG0161 KOG0161 KOG0161 Myosin class II heavy chain [Cytoskeleton].
rpsblast_kog gnl|CDD|36212 175 657 + 483 Gaps:79 31.40 1758 15.94 5e-10 KOG0994 KOG0994 KOG0994 Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures].
rpsblast_kog gnl|CDD|36180 84 670 + 587 Gaps:29 43.74 1294 18.37 8e-08 KOG0962 KOG0962 KOG0962 DNA repair protein RAD50 ABC-type ATPase/SMC superfamily [Replication recombination and repair].
rpsblast_kog gnl|CDD|36151 267 672 + 406 Gaps:35 33.65 1174 18.23 1e-07 KOG0933 KOG0933 KOG0933 Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin subunit E) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning].
rpsblast_kog gnl|CDD|36198 211 519 + 309 Gaps:34 29.29 980 22.30 2e-07 KOG0980 KOG0980 KOG0980 Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton].
rpsblast_kog gnl|CDD|36214 318 663 + 346 Gaps:18 25.99 1293 20.54 5e-07 KOG0996 KOG0996 KOG0996 Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin subunit C) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning].

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 791 791 PTHR23160 none none none
Coils 311 339 29 Coil none none none
Coils 160 181 22 Coil none none none
PANTHER 1 791 791 PTHR23160:SF2 none none none
Coils 252 304 53 Coil none none none
Coils 230 251 22 Coil none none none
Coils 648 669 22 Coil none none none
Coils 458 543 86 Coil none none none
Coils 550 641 92 Coil none none none
Coils 430 451 22 Coil none none none
Coils 388 423 36 Coil none none none
Coils 82 149 68 Coil none none none
Pfam 80 383 304 PF05701 none Weak chloroplast movement under blue light IPR008545
Coils 346 374 29 Coil none none none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting