Protein : Qrob_P0026940.2 Q. robur
Protein Identifier  ? Qrob_P0026940.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=8) PF04640 - PLATZ transcription factor Gene Prediction Quality  validated
Protein length 

Sequence

Length: 217  
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0 Synonyms

0 GO Terms

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_025548 12 216 + 205 Gaps:3 86.55 238 86.89 2e-129 PLATZ transcription factor family protein isoform 1
blastp_kegg lcl|gmx:100792668 6 216 + 211 Gaps:6 93.94 231 82.95 5e-129 uncharacterized LOC100792668
blastp_kegg lcl|rcu:RCOM_1327780 15 216 + 202 Gaps:2 81.27 251 87.75 3e-128 protein with unknown function
blastp_kegg lcl|pvu:PHAVU_002G041400g 1 216 + 216 Gaps:5 95.26 232 80.09 6e-127 hypothetical protein
blastp_kegg lcl|gmx:100796834 12 214 + 203 Gaps:1 87.18 234 85.78 7e-127 uncharacterized LOC100796834
blastp_kegg lcl|pop:POPTR_0013s07610g 1 216 + 216 Gaps:3 91.25 240 80.82 3e-126 POPTRDRAFT_1097102 hypothetical protein
blastp_kegg lcl|gmx:100810757 3 216 + 214 Gaps:8 99.55 223 79.73 3e-126 uncharacterized LOC100810757
blastp_kegg lcl|pop:POPTR_0019s07790g 12 216 + 205 Gaps:2 85.89 241 83.57 3e-125 POPTRDRAFT_738385 hypothetical protein
blastp_kegg lcl|cit:102629881 13 216 + 204 Gaps:5 83.54 243 87.19 4e-125 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_011G018500g 4 216 + 213 Gaps:7 97.78 225 79.55 1e-124 hypothetical protein
blastp_uniprot_sprot sp|P0CB19|Y3081_ARATH 85 209 + 125 Gaps:26 99.09 110 34.86 9e-07 Uncharacterized protein At3g50808 OS Arabidopsis thaliana GN At3g50808 PE 4 SV 1
rpsblast_cdd gnl|CDD|191051 72 143 + 72 none 100.00 72 75.00 3e-34 pfam04640 PLATZ PLATZ transcription factor. Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression.

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 216 216 PTHR31065 none none none
PANTHER 1 216 216 PTHR31065:SF5 none none none
Pfam 72 143 72 PF04640 none PLATZ transcription factor IPR006734

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting