Protein : Qrob_P0026800.2 Q. robur
Protein Identifier  ? Qrob_P0026800.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=5) PF08879//PF08880 - WRC // QLQ Gene Prediction Quality  validated
Protein length 

Sequence

Length: 334  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

5 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0032502 developmental process A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa022199mg 24 333 + 310 Gaps:2 92.77 332 88.64 0.0 hypothetical protein
blastp_kegg lcl|pmum:103333470 24 329 + 306 Gaps:2 92.40 329 88.16 0.0 growth-regulating factor 4-like
blastp_kegg lcl|cic:CICLE_v10032065mg 25 330 + 306 Gaps:3 92.47 332 85.99 0.0 hypothetical protein
blastp_kegg lcl|cit:102627866 25 330 + 306 Gaps:3 92.47 332 85.99 0.0 growth-regulating factor 4-like
blastp_kegg lcl|cit:102627578 25 330 + 306 Gaps:3 92.47 332 85.99 0.0 growth-regulating factor 4-like
blastp_kegg lcl|fve:101313648 24 330 + 307 Gaps:2 91.32 334 84.59 0.0 growth-regulating factor 5-like
blastp_kegg lcl|pop:POPTR_0013s07500g 24 329 + 306 Gaps:2 89.41 340 82.89 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_025561 22 330 + 309 Gaps:8 90.52 348 83.17 0.0 Growth-regulating factor 5
blastp_kegg lcl|vvi:100259737 19 330 + 312 Gaps:4 95.76 330 82.28 5e-180 uncharacterized LOC100259737
blastp_kegg lcl|gmx:100787226 9 330 + 322 Gaps:7 98.17 327 76.64 4e-174 growth-regulating factor 4-like
blastp_uniprot_sprot sp|Q6AWY6|GRF3_ORYSJ 26 333 + 308 Gaps:41 86.05 387 47.45 7e-92 Growth-regulating factor 3 OS Oryza sativa subsp. japonica GN GRF3 PE 3 SV 2
blastp_uniprot_sprot sp|Q6AWY4|GRF5_ORYSJ 27 320 + 294 Gaps:44 93.10 348 49.07 8e-90 Growth-regulating factor 5 OS Oryza sativa subsp. japonica GN GRF5 PE 2 SV 1
blastp_uniprot_sprot sp|Q6ZIK5|GRF4_ORYSJ 27 316 + 290 Gaps:58 79.70 394 50.64 3e-89 Growth-regulating factor 4 OS Oryza sativa subsp. japonica GN GRF4 PE 2 SV 1
blastp_uniprot_sprot sp|A2XA73|GRF1_ORYSI 26 332 + 307 Gaps:93 95.45 396 37.57 7e-53 Growth-regulating factor 1 OS Oryza sativa subsp. indica GN GRF1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AWY8|GRF1_ORYSJ 26 332 + 307 Gaps:94 95.47 397 37.47 3e-52 Growth-regulating factor 1 OS Oryza sativa subsp. japonica GN GRF1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8L8A6|GRF5_ARATH 13 130 + 118 Gaps:4 30.73 397 60.66 2e-45 Growth-regulating factor 5 OS Arabidopsis thaliana GN GRF5 PE 1 SV 1
blastp_uniprot_sprot sp|Q6AWY7|GRF2_ORYSJ 17 319 + 303 Gaps:83 91.03 301 43.07 1e-40 Growth-regulating factor 2 OS Oryza sativa subsp. japonica GN GRF2 PE 3 SV 1
blastp_uniprot_sprot sp|Q8L8A8|GRF2_ARATH 21 148 + 128 Gaps:4 24.30 535 53.85 4e-39 Growth-regulating factor 2 OS Arabidopsis thaliana GN GRF2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6AWY3|GRF6_ORYSJ 18 132 + 115 Gaps:4 19.73 603 61.34 6e-39 Growth-regulating factor 6 OS Oryza sativa subsp. japonica GN GRF6 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SJR5|GRF3_ARATH 23 138 + 116 Gaps:7 30.90 398 55.28 2e-38 Growth-regulating factor 3 OS Arabidopsis thaliana GN GRF3 PE 2 SV 1
rpsblast_cdd gnl|CDD|192171 87 130 + 44 none 95.65 46 75.00 7e-19 pfam08879 WRC WRC. The WRC domain named after the conserved Trp-Arg-Cys motif contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that the WRC domain functions in DNA binding.
rpsblast_cdd gnl|CDD|204086 25 61 + 37 none 100.00 37 56.76 6e-13 pfam08880 QLQ QLQ. The QLQ domain is named after the conserved Gln Leu Gln motif. The QLQ domain is found at the N-terminus of SWI2/SNF2 protein which has been shown to be involved in protein-protein interactions. This domain has thus been postulated to be involved in mediating protein interactions.
rpsblast_cdd gnl|CDD|198019 25 59 + 35 Gaps:1 100.00 36 47.22 6e-07 smart00951 QLQ QLQ is named after the conserved Gln Leu Gln motif. QLQ is found at the N-terminus of SWI2/SNF2 protein which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 87 131 45 PF08879 none WRC IPR014977
ProSiteProfiles 87 131 45 PS51667 none WRC domain profile. IPR014977
PANTHER 23 332 310 PTHR31602:SF4 none none none
PANTHER 23 332 310 PTHR31602 none none IPR031137
Pfam 25 61 37 PF08880 none QLQ IPR014978
ProSiteProfiles 26 61 36 PS51666 none QLQ domain profile. IPR014978
SMART 25 61 37 SM00951 none none IPR014978

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL8_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BXT7R_864 29.91 0 47,18 lod 7.0997 0.044

0 Targeting