Protein : Qrob_P0026460.2 Q. robur
Protein Identifier  ? Qrob_P0026460.2 Organism . Name  Quercus robur
Score  95.0 Score Type  egn
Protein Description  (M=1) PTHR11142//PTHR11142:SF7 - PSEUDOURIDYLATE SYNTHASE // SUBFAMILY NOT NAMED Code Enzyme  EC:5.4.99.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 275  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0001522 pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
GO:0009451 RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
GO:0009982 pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1712560 20 274 + 255 Gaps:2 57.56 443 69.41 2e-116 pseudouridylate synthase putative (EC:5.4.99.12)
blastp_kegg lcl|vvi:100242086 19 274 + 256 Gaps:9 59.35 433 66.54 3e-111 tRNA pseudouridine synthase A-like
blastp_kegg lcl|pper:PRUPE_ppa006478mg 39 273 + 235 Gaps:2 57.46 409 67.66 4e-109 hypothetical protein
blastp_kegg lcl|pmum:103323712 39 273 + 235 Gaps:2 57.46 409 67.23 9e-109 uncharacterized LOC103323712
blastp_kegg lcl|mdm:103453647 39 274 + 236 Gaps:1 57.80 410 67.09 1e-108 uncharacterized LOC103453647
blastp_kegg lcl|gmx:100789957 25 273 + 249 Gaps:18 52.03 444 70.13 2e-108 tRNA pseudouridine synthase A mitochondrial-like
blastp_kegg lcl|pxb:103952202 39 274 + 236 Gaps:1 57.80 410 66.67 2e-107 uncharacterized LOC103952202
blastp_kegg lcl|pop:POPTR_0018s14400g 20 274 + 255 Gaps:9 57.14 448 65.62 1e-105 hypothetical protein
blastp_kegg lcl|cmo:103494203 25 273 + 249 Gaps:13 56.31 444 64.00 8e-105 uncharacterized LOC103494203
blastp_kegg lcl|cit:102622951 13 274 + 262 Gaps:11 56.61 454 65.37 9e-104 uncharacterized LOC102622951
blastp_pdb 2nre_A 55 180 + 126 Gaps:18 42.22 270 38.60 5e-08 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 2nr0_D 55 180 + 126 Gaps:18 42.22 270 38.60 5e-08 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 2nr0_C 55 180 + 126 Gaps:18 42.22 270 38.60 5e-08 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 2nr0_B 55 180 + 126 Gaps:18 42.22 270 38.60 5e-08 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 2nr0_A 55 180 + 126 Gaps:18 42.22 270 38.60 5e-08 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 2nqp_D 55 180 + 126 Gaps:18 42.22 270 38.60 5e-08 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 2nqp_C 55 180 + 126 Gaps:18 42.22 270 38.60 5e-08 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 2nqp_B 55 180 + 126 Gaps:18 42.22 270 38.60 5e-08 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 2nqp_A 55 180 + 126 Gaps:18 42.22 270 38.60 5e-08 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 1dj0_B 55 180 + 126 Gaps:18 43.18 264 38.60 7e-08 mol:protein length:264 PSEUDOURIDINE SYNTHASE I
blastp_uniprot_sprot sp|Q01WL4|TRUA_SOLUE 57 178 + 122 Gaps:14 45.00 240 42.59 3e-16 tRNA pseudouridine synthase A OS Solibacter usitatus (strain Ellin6076) GN truA PE 3 SV 1
blastp_uniprot_sprot sp|B4SA76|TRUA_PELPB 57 180 + 124 Gaps:15 45.68 243 44.14 4e-15 tRNA pseudouridine synthase A OS Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN truA PE 3 SV 1
blastp_uniprot_sprot sp|Q2NIY3|TRUA_AYWBP 56 190 + 135 Gaps:17 51.03 243 37.10 9e-14 tRNA pseudouridine synthase A OS Aster yellows witches'-broom phytoplasma (strain AYWB) GN truA PE 3 SV 1
blastp_uniprot_sprot sp|B5YDX5|TRUA_DICT6 55 179 + 125 Gaps:14 46.12 245 43.36 1e-13 tRNA pseudouridine synthase A OS Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN truA PE 3 SV 1
blastp_uniprot_sprot sp|B1HMV0|TRUA_LYSSC 56 180 + 125 Gaps:13 45.53 246 41.96 2e-13 tRNA pseudouridine synthase A OS Lysinibacillus sphaericus (strain C3-41) GN truA PE 3 SV 1
blastp_uniprot_sprot sp|B5RQJ5|TRUA_BORRA 60 189 + 130 Gaps:20 48.98 245 40.00 3e-13 tRNA pseudouridine synthase A OS Borrelia recurrentis (strain A1) GN truA PE 3 SV 1
blastp_uniprot_sprot sp|B5RLM0|TRUA_BORDL 60 189 + 130 Gaps:20 48.98 245 40.00 3e-13 tRNA pseudouridine synthase A OS Borrelia duttonii (strain Ly) GN truA PE 3 SV 1
blastp_uniprot_sprot sp|Q035B5|TRUA_LACC3 56 178 + 123 Gaps:13 44.53 247 39.09 5e-13 tRNA pseudouridine synthase A OS Lactobacillus casei (strain ATCC 334) GN truA PE 3 SV 1
blastp_uniprot_sprot sp|Q28LN3|TRUA_JANSC 53 178 + 126 Gaps:17 42.53 261 39.64 5e-13 tRNA pseudouridine synthase A OS Jannaschia sp. (strain CCS1) GN truA PE 3 SV 1
blastp_uniprot_sprot sp|P60351|TRUA_ONYPE 56 190 + 135 Gaps:17 51.03 243 37.10 5e-13 tRNA pseudouridine synthase A OS Onion yellows phytoplasma (strain OY-M) GN truA PE 3 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 55 171 117 G3DSA:3.30.70.580 none none IPR020094
PANTHER 43 199 157 PTHR11142:SF7 none none none
PANTHER 43 199 157 PTHR11142 none none IPR001406
Pfam 59 169 111 PF01416 none tRNA pseudouridine synthase IPR020097
PANTHER 239 274 36 PTHR11142:SF7 none none none
SUPERFAMILY 55 195 141 SSF55120 none none IPR020103
SUPERFAMILY 237 254 18 SSF55120 none none IPR020103
PANTHER 239 274 36 PTHR11142 none none IPR001406

0 Localization

0 Qtllist

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 16   Secretory pathway 3 0.765 0.051 NON-PLANT 16