Protein : Qrob_P0025330.2 Q. robur
Protein Identifier  ? Qrob_P0025330.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=8) K01184 - polygalacturonase [EC:3.2.1.15] Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 312  
Kegg Orthology  K01184
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103456333 3 311 + 309 Gaps:54 83.67 398 56.76 1e-115 polygalacturonase-like
blastp_kegg lcl|pxb:103935606 3 311 + 309 Gaps:54 83.67 398 56.16 5e-114 polygalacturonase-like
blastp_kegg lcl|pmum:103326790 1 311 + 311 Gaps:54 85.46 392 55.52 8e-114 polygalacturonase-like
blastp_kegg lcl|pper:PRUPE_ppa007271mg 1 311 + 311 Gaps:54 89.33 375 56.72 1e-113 hypothetical protein
blastp_kegg lcl|pmum:103326925 2 311 + 310 Gaps:54 85.20 392 55.99 1e-113 polygalacturonase-like
blastp_kegg lcl|fve:101302685 1 311 + 311 Gaps:54 85.68 391 56.42 3e-113 polygalacturonase-like
blastp_kegg lcl|fve:101304682 3 311 + 309 Gaps:54 84.95 392 55.86 3e-113 polygalacturonase-like
blastp_kegg lcl|pper:PRUPE_ppa021953mg 2 311 + 310 Gaps:54 88.83 376 55.39 6e-113 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa025787mg 1 311 + 311 Gaps:54 85.46 392 55.22 2e-112 hypothetical protein
blastp_kegg lcl|pmum:103326791 1 311 + 311 Gaps:55 85.50 393 55.65 3e-112 polygalacturonase
blastp_pdb 1bhe_A 35 285 + 251 Gaps:48 69.41 376 28.74 1e-08 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 1rmg_A 6 286 + 281 Gaps:53 68.72 422 21.03 8e-08 mol:protein length:422 RHAMNOGALACTURONASE A
blastp_pdb 1hg8_A 106 299 + 194 Gaps:44 57.31 349 29.00 9e-06 mol:protein length:349 ENDOPOLYGALACTURONASE
blastp_uniprot_sprot sp|P48979|PGLR_PRUPE 1 311 + 311 Gaps:55 85.50 393 54.17 2e-111 Polygalacturonase OS Prunus persica PE 2 SV 1
blastp_uniprot_sprot sp|O22818|PGLR6_ARATH 3 311 + 309 Gaps:55 82.47 405 46.71 6e-83 Probable polygalacturonase At2g43860 OS Arabidopsis thaliana GN At2g43860 PE 2 SV 1
blastp_uniprot_sprot sp|Q6H9K0|PGLR2_PLAAC 3 310 + 308 Gaps:57 89.39 377 35.61 6e-48 Exopolygalacturonase (Fragment) OS Platanus acerifolia GN plaa2 PE 1 SV 1
blastp_uniprot_sprot sp|P24548|PGLR_OENOR 3 283 + 281 Gaps:55 85.08 362 34.74 3e-47 Exopolygalacturonase (Fragment) OS Oenothera organensis PE 2 SV 1
blastp_uniprot_sprot sp|Q05967|PGLR_TOBAC 3 295 + 293 Gaps:55 80.30 396 35.53 1e-46 Polygalacturonase OS Nicotiana tabacum GN PG1 PE 2 SV 1
blastp_uniprot_sprot sp|P49062|PGLR1_ARATH 3 282 + 280 Gaps:47 70.85 422 32.78 1e-46 Exopolygalacturonase clone GBGE184 OS Arabidopsis thaliana GN PGA3 PE 2 SV 1
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 5 306 + 302 Gaps:63 75.87 431 35.17 2e-43 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|P49063|PGLR2_ARATH 4 308 + 305 Gaps:72 73.65 444 34.86 1e-42 Exopolygalacturonase clone GBGA483 OS Arabidopsis thaliana GN At3g07850 PE 2 SV 2
blastp_uniprot_sprot sp|P35339|PGLR3_MAIZE 5 280 + 276 Gaps:56 74.15 410 33.88 6e-41 Exopolygalacturonase OS Zea mays GN PG2C PE 2 SV 1
blastp_uniprot_sprot sp|Q9LW07|PGLR3_ARATH 8 311 + 304 Gaps:69 72.15 456 34.35 1e-39 Probable polygalacturonase At3g15720 OS Arabidopsis thaliana GN At3g15720 PE 1 SV 1
rpsblast_cdd gnl|CDD|165802 4 311 + 308 Gaps:54 84.26 394 40.96 1e-57 PLN02155 PLN02155 polygalacturonase.
rpsblast_cdd gnl|CDD|177840 5 298 + 294 Gaps:60 79.70 404 35.71 4e-48 PLN02188 PLN02188 polygalacturonase/glycoside hydrolase family protein.
rpsblast_cdd gnl|CDD|144034 3 301 + 299 Gaps:54 98.15 325 32.92 5e-42 pfam00295 Glyco_hydro_28 Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A) EC:3.2.1.-. These enzymes is important in cell wall metabolism.
rpsblast_cdd gnl|CDD|177865 5 309 + 305 Gaps:63 76.57 431 33.03 9e-39 PLN02218 PLN02218 polygalacturonase ADPG.
rpsblast_cdd gnl|CDD|178390 4 306 + 303 Gaps:71 75.40 443 31.44 3e-38 PLN02793 PLN02793 Probable polygalacturonase.
rpsblast_cdd gnl|CDD|178580 8 311 + 304 Gaps:69 72.15 456 34.04 4e-35 PLN03003 PLN03003 Probable polygalacturonase At3g15720.
rpsblast_cdd gnl|CDD|178586 5 303 + 299 Gaps:72 77.02 409 33.02 3e-34 PLN03010 PLN03010 polygalacturonase.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 2 311 310 PTHR31375 none none none
PANTHER 2 311 310 PTHR31375:SF2 none none none
Pfam 3 299 297 PF00295 none Glycosyl hydrolases family 28 IPR000743
SUPERFAMILY 3 310 308 SSF51126 none none IPR011050
Gene3D 3 309 307 G3DSA:2.160.20.10 none none IPR012334

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting