Protein : Qrob_P0025130.2 Q. robur
Protein Identifier  ? Qrob_P0025130.2 Organism . Name  Quercus robur
Score  87.0 Score Type  egn
Protein Description  (M=1) 3.5.1.16 - Acetylornithine deacetylase. Code Enzyme  EC:3.5.1.16
Gene Prediction Quality  validated Protein length 

Sequence

Length: 434  
Kegg Orthology  K01438
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0016787 hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103336910 3 433 + 431 Gaps:6 99.77 438 89.70 0.0 acetylornithine deacetylase
blastp_kegg lcl|pper:PRUPE_ppa005898mg 3 433 + 431 Gaps:6 99.77 438 89.70 0.0 hypothetical protein
blastp_kegg lcl|pxb:103965729 3 433 + 431 Gaps:6 99.77 438 88.10 0.0 acetylornithine deacetylase-like
blastp_kegg lcl|pxb:103967453 3 433 + 431 Gaps:6 99.77 438 87.87 0.0 acetylornithine deacetylase-like
blastp_kegg lcl|mdm:103436887 1 433 + 433 Gaps:6 100.00 439 87.02 0.0 acetylornithine deacetylase-like
blastp_kegg lcl|mdm:103403998 3 433 + 431 Gaps:6 99.77 438 87.64 0.0 acetylornithine deacetylase-like
blastp_kegg lcl|vvi:100252374 8 433 + 426 Gaps:6 99.77 433 86.81 0.0 acetylornithine deacetylase-like
blastp_kegg lcl|gmx:100814676 3 433 + 431 Gaps:6 99.77 438 84.21 0.0 acetylornithine deacetylase-like
blastp_kegg lcl|tcc:TCM_015726 4 433 + 430 Gaps:6 91.21 478 85.09 0.0 Peptidase M20/M25/M40 family protein isoform 1
blastp_kegg lcl|cam:101505292 3 433 + 431 Gaps:6 99.77 438 84.67 0.0 acetylornithine deacetylase-like
blastp_pdb 1vgy_B 94 255 + 162 Gaps:9 43.00 393 28.40 1e-07 mol:protein length:393 succinyl-diaminopimelate desuccinylase
blastp_pdb 1vgy_A 94 255 + 162 Gaps:9 43.00 393 28.40 1e-07 mol:protein length:393 succinyl-diaminopimelate desuccinylase
blastp_uniprot_sprot sp|Q9C5C4|ARGE_ARATH 1 432 + 432 Gaps:6 99.55 440 81.05 0.0 Acetylornithine deacetylase OS Arabidopsis thaliana GN At4g17830 PE 2 SV 1
blastp_uniprot_sprot sp|P54638|ARGE_DICDI 14 432 + 419 Gaps:20 97.76 447 48.05 1e-138 Acetylornithine deacetylase OS Dictyostelium discoideum GN argE PE 1 SV 2
blastp_uniprot_sprot sp|Q6G1H9|DAPE_BARQU 92 389 + 298 Gaps:45 72.56 390 28.98 2e-10 Succinyl-diaminopimelate desuccinylase OS Bartonella quintana (strain Toulouse) GN dapE PE 3 SV 1
blastp_uniprot_sprot sp|A9ILD7|DAPE_BART1 95 389 + 295 Gaps:37 71.79 390 26.79 8e-10 Succinyl-diaminopimelate desuccinylase OS Bartonella tribocorum (strain CIP 105476 / IBS 506) GN dapE PE 3 SV 1
blastp_uniprot_sprot sp|B0RW53|DAPE_XANCB 94 255 + 162 Gaps:19 44.95 376 32.54 1e-09 Succinyl-diaminopimelate desuccinylase OS Xanthomonas campestris pv. campestris (strain B100) GN dapE PE 3 SV 1
blastp_uniprot_sprot sp|Q8PAU0|DAPE_XANCP 94 255 + 162 Gaps:19 44.95 376 32.54 1e-09 Succinyl-diaminopimelate desuccinylase OS Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN dapE PE 3 SV 2
blastp_uniprot_sprot sp|Q4USS4|DAPE_XANC8 94 255 + 162 Gaps:19 44.95 376 32.54 1e-09 Succinyl-diaminopimelate desuccinylase OS Xanthomonas campestris pv. campestris (strain 8004) GN dapE PE 3 SV 2
blastp_uniprot_sprot sp|B4SQ35|DAPE_STRM5 94 255 + 162 Gaps:19 45.07 375 32.54 1e-09 Succinyl-diaminopimelate desuccinylase OS Stenotrophomonas maltophilia (strain R551-3) GN dapE PE 3 SV 1
blastp_uniprot_sprot sp|Q3BVJ3|DAPE_XANC5 94 255 + 162 Gaps:19 44.95 376 32.54 1e-09 Succinyl-diaminopimelate desuccinylase OS Xanthomonas campestris pv. vesicatoria (strain 85-10) GN dapE PE 3 SV 1
blastp_uniprot_sprot sp|Q886Q4|DAPE_PSESM 88 255 + 168 Gaps:24 45.95 383 32.39 4e-09 Succinyl-diaminopimelate desuccinylase OS Pseudomonas syringae pv. tomato (strain DC3000) GN dapE PE 3 SV 1
rpsblast_cdd gnl|CDD|193560 15 431 + 417 Gaps:8 100.00 423 70.21 0.0 cd08012 M20_ArgE-related M20 Peptidases with simlarity to acetylornithine deacetylases. Peptidase M20 family acetylornithine deacetylase (ArgE Acetylornithinase AO N2-acetyl-L-ornithine amidohydrolase EC 3.5.1.16)-related subfamily. Proteins in this subfamily have not yet been characterized but have been predicted to have deacetylase activity. ArgE catalyzes the conversion of N-acetylornithine to ornithine which can then be incorporated into the urea cycle for the final stage of arginine synthesis. The substrate specificity of ArgE is quite broad several alpha-N-acyl-L-amino acids can be hydrolyzed including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features and possibly a common origin with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE) and aminoacylase I (ACY1) having all metal ligand binding residues conserved.
rpsblast_cdd gnl|CDD|193570 78 428 + 351 Gaps:51 88.22 365 22.98 1e-33 cd08659 M20_ArgE_DapE_like Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like. Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) like family of enzymes catalyze analogous reactions and share a common activator the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates including N-acetylornithine alpha-N-acetylmethionine and alpha-N-formylmethionine while DapE catalyzes the hydrolysis of N-succinyl-L L-diaminopimelate (L L-SDAP) to L L-diaminopimelate and succinate. Proteins in this family are mostly bacterial and have been inferred by homology as being related to both ArgE and DapE. This family also includes N-acetyl-L-citrulline deacetylase (ACDase acetylcitrulline deacetylase) a unique novel enzyme found in Xanthomonas campestris a plant pathogen in which N-acetyl-L-ornithine is the substrate for transcarbamoylation reaction and the product is N-acetyl-L-citrulline. Thus in the arginine biosynthesis pathway ACDase subsequently catalyzes the hydrolysis of N-acetyl-L-citrulline to acetate and L-citrulline.
rpsblast_cdd gnl|CDD|201850 101 428 + 328 Gaps:30 98.06 310 23.68 4e-30 pfam01546 Peptidase_M20 Peptidase family M20/M25/M40. This family includes a range of zinc metallopeptidases belonging to several families in the peptidase classification. Family M20 are Glutamate carboxypeptidases. Peptidase family M25 contains X-His dipeptidases.
rpsblast_cdd gnl|CDD|30969 14 431 + 418 Gaps:38 97.31 409 24.62 2e-27 COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|193495 39 424 + 386 Gaps:18 96.20 237 31.14 1e-24 cd03873 Zinc_peptidase_like Zinc peptidases M18 M20 M28 and M42. Zinc peptidases play vital roles in metabolic and signaling pathways throughout all kingdoms of life. This family corresponds to several clans in the MEROPS database including the MH clan which contains 4 families (M18 M20 M28 M42). The peptidase M20 family includes carboxypeptidases such as the glutamate carboxypeptidase from Pseudomonas the thermostable carboxypeptidase Ss1 of broad specificity from archaea and yeast Gly-X carboxypeptidase. The dipeptidases include bacterial dipeptidase peptidase V (PepV) a eukaryotic non-specific dipeptidase and two Xaa-His dipeptidases (carnosinases). There is also the bacterial aminopeptidase peptidase T (PepT) that acts only on tripeptide substrates and has therefore been termed a tripeptidase. Peptidase family M28 contains aminopeptidases and carboxypeptidases and has co-catalytic zinc ions. However several enzymes in this family utilize other first row transition metal ions such as cobalt and manganese. Each zinc ion is tetrahedrally co-ordinated with three amino acid ligands plus activated water one aspartate residue binds both metal ions. The aminopeptidases in this family are also called bacterial leucyl aminopeptidases but are able to release a variety of N-terminal amino acids. IAP aminopeptidase and aminopeptidase Y preferentially release basic amino acids while glutamate carboxypeptidase II preferentially releases C-terminal glutamates. Glutamate carbxypeptidase II and plasma glutamate carboxypeptidase hydrolyze dipeptides. Peptidase families M18 and M42 contain metalloaminopeptidases. M18 is widely distributed in bacteria and eukaryotes. However only yeast aminopeptidase I and mammalian aspartyl aminopeptidase have been characterized in detail. Some of M42 (also known as glutamyl aminopeptidase) enzymes exhibit aminopeptidase specificity while others also have acylaminoacylpeptidase activity (i.e. hydrolysis of acylated N-terminal residues).
rpsblast_cdd gnl|CDD|162596 21 417 + 397 Gaps:66 98.40 375 27.37 4e-23 TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase but does not contain any members with experimental characterization. Bacillus Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
rpsblast_cdd gnl|CDD|193550 73 288 + 216 Gaps:33 51.88 426 28.05 2e-21 cd05675 M20_yscS_like M20 Peptidase carboxypeptidase yscS-like. Peptidase M20 family yscS (GlyX-carboxypeptidase CPS1 carboxypeptidase S carboxypeptidase a carboxypeptidase yscS glycine carboxypeptidase)-like subfamily. This group contains proteins that have been uncharacterized to date with similarity to vacuolar proteins involved in nitrogen metabolism which are essential for use of certain peptides that are sole nitrogen sources. YscS releases a C-terminal amino acid from a peptide that has glycine as the penultimate residue. It is synthesized as one polypeptide chain precursor which yields two active precursor molecules after carbohydrate modification in the secretory pathway. The proteolytically unprocessed forms are associated with the membrane whereas the mature forms of the enzyme are soluble. Enzymes in this subfamily may also cleave intracellularly generated peptides in order to recycle amino acids for protein synthesis.
rpsblast_cdd gnl|CDD|181522 21 431 + 411 Gaps:45 96.95 394 24.08 3e-21 PRK08651 PRK08651 succinyl-diaminopimelate desuccinylase Reviewed.

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 206 313 108 PF07687 none Peptidase dimerisation domain IPR011650
PANTHER 14 311 298 PTHR11014 none none none
PANTHER 331 433 103 PTHR11014 none none none
Gene3D 211 313 103 G3DSA:3.30.70.360 none none IPR011650
Pfam 99 429 331 PF01546 none Peptidase family M20/M25/M40 IPR002933
SUPERFAMILY 210 314 105 SSF55031 none none IPR011650
Gene3D 345 431 87 G3DSA:3.40.630.10 none none none
Gene3D 15 210 196 G3DSA:3.40.630.10 none none none
PANTHER 14 311 298 PTHR11014:SF7 none none none
PANTHER 331 433 103 PTHR11014:SF7 none none none
SUPERFAMILY 14 209 196 SSF53187 none none none
SUPERFAMILY 349 431 83 SSF53187 none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting