11 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pper:PRUPE_ppa007667mg | 5 | 63 | + | 59 | none | 16.39 | 360 | 83.05 | 7e-27 | hypothetical protein |
| blastp_kegg | lcl|pmum:103323221 | 5 | 63 | + | 59 | none | 16.39 | 360 | 83.05 | 8e-27 | F-box protein At5g49610 |
| blastp_kegg | lcl|pxb:103961269 | 5 | 63 | + | 59 | none | 16.43 | 359 | 79.66 | 1e-25 | F-box protein At5g49610 |
| blastp_kegg | lcl|mdm:103420915 | 5 | 63 | + | 59 | none | 16.48 | 358 | 79.66 | 1e-25 | F-box protein At5g49610-like |
| blastp_kegg | lcl|mdm:103407989 | 5 | 63 | + | 59 | none | 16.48 | 358 | 79.66 | 1e-25 | F-box protein At5g49610-like |
| blastp_kegg | lcl|mdm:103403511 | 5 | 63 | + | 59 | none | 16.43 | 359 | 77.97 | 2e-25 | F-box protein At5g49610 |
| blastp_kegg | lcl|pop:POPTR_0010s15890g | 5 | 62 | + | 58 | none | 16.16 | 359 | 77.59 | 3e-24 | POPTRDRAFT_1091176 hypothetical protein |
| blastp_kegg | lcl|fve:101297332 | 5 | 63 | + | 59 | none | 16.34 | 361 | 71.19 | 5e-24 | F-box protein At5g49610-like isoform 1 |
| blastp_kegg | lcl|gmx:100811223 | 5 | 71 | + | 67 | Gaps:3 | 18.82 | 372 | 68.57 | 8e-24 | F-box protein At5g49610-like |
| blastp_kegg | lcl|pvu:PHAVU_006G120400g | 5 | 63 | + | 59 | none | 16.91 | 349 | 76.27 | 1e-23 | hypothetical protein |
| blastp_uniprot_sprot | sp|Q9FGY4|FB341_ARATH | 5 | 72 | + | 68 | Gaps:4 | 20.06 | 359 | 62.50 | 4e-23 | F-box protein At5g49610 OS Arabidopsis thaliana GN At5g49610 PE 1 SV 1 |
5 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Phobius | 2 | 12 | 11 | SIGNAL_PEPTIDE_H_REGION | none | Hydrophobic region of a signal peptide. | none |
| Phobius | 1 | 16 | 16 | SIGNAL_PEPTIDE | none | Signal peptide region | none |
| Phobius | 13 | 16 | 4 | SIGNAL_PEPTIDE_C_REGION | none | C-terminal region of a signal peptide. | none |
| Phobius | 1 | 1 | 1 | SIGNAL_PEPTIDE_N_REGION | none | N-terminal region of a signal peptide. | none |
| Phobius | 17 | 81 | 65 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
7 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2014_vSeqBC_3P | Qrob_Chr10 | 10 | s_1A6CK6_610 | v_7092_29 | 4,28 | 0 | 23,27 | lod | 2,8619 | 7 |
| Bourran2_2015_nEpis_3P | Qrob_Chr12 | 12 | s_1AOES6_1466 | s_1B0DDG_1094 | 28,97 | 28,55 | 30,1 | lod | 3.6 | 8.4 |
| Bourran2_2014_nFork*_3P | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 34,28 | 7,43 | 41,48 | lod | 2,4044 | 5,5 |
| Bourran1_2004_QTL4_peak_Bud_burst_3P | Qrob_Chr04 | 4 | s_1AHUWN_1101 | s_1BRNG7_1618 | 30,55 | 0 | 47,55 | lod | 2,8 | 7,4 |
| Bourran2_2002_QTL10_peak_Bud_burst_A4 | Qrob_Chr04 | 4 | s_1B59MJ_737 | s_1BGLSD_999 | 15,86 | 0 | 41,66 | lod | 2,8 | 4 |
| Bourran1_2000_QTL3_peak_Bud_burst_3P | Qrob_Chr04 | 4 | s_1A6DJQ_418 | s_1A1PEC_1268 | 23,09 | 9,09 | 44,09 | lod | 2,3 | 6,8 |
| NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf | Qrob_Chr04 | 4 | s_1B91MJ_705 | s_1AHIKX_640 | 33.92 | 12,11 | 48,31 | lod | 6.1865 | 0.023 |
