Protein : Qrob_P0025060.2 Q. robur
Protein Identifier  ? Qrob_P0025060.2 Organism . Name  Quercus robur
Score  95.1 Score Type  egn
Protein Description  (M=1) K11826 - AP-2 complex subunit mu-1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 327  
Kegg Orthology  K11826
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0030131 clathrin adaptor complex A membrane coat adaptor complex that links clathrin to a membrane.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10031568mg 2 324 + 323 Gaps:2 74.20 438 96.00 0.0 hypothetical protein
blastp_kegg lcl|cit:102611906 2 324 + 323 Gaps:2 74.20 438 96.00 0.0 AP-2 complex subunit mu-like
blastp_kegg lcl|tcc:TCM_015733 2 324 + 323 Gaps:2 74.20 438 95.69 0.0 Clathrin adaptor complexes medium subunit family protein isoform 1
blastp_kegg lcl|pop:POPTR_0003s08940g 2 324 + 323 Gaps:2 74.20 438 95.08 0.0 AP47/50p mRNA family protein
blastp_kegg lcl|vvi:100250494 2 324 + 323 Gaps:2 74.20 438 95.08 0.0 AP-2 complex subunit mu-like
blastp_kegg lcl|fve:101311095 2 324 + 323 Gaps:2 74.20 438 95.38 0.0 AP-2 complex subunit mu-like
blastp_kegg lcl|rcu:RCOM_0864950 2 324 + 323 Gaps:2 79.66 408 95.08 0.0 clathrin coat associated protein ap-50 putative
blastp_kegg lcl|mus:103975751 2 324 + 323 Gaps:2 74.20 438 95.08 0.0 AP-2 complex subunit mu
blastp_kegg lcl|pmum:103336915 2 324 + 323 Gaps:2 74.20 438 95.08 0.0 AP-2 complex subunit mu
blastp_kegg lcl|pper:PRUPE_ppa005912mg 2 324 + 323 Gaps:2 74.20 438 95.08 0.0 hypothetical protein
blastp_pdb 2vgl_M 1 324 + 324 Gaps:11 74.71 435 50.15 2e-110 mol:protein length:435 AP-2 COMPLEX SUBUNIT MU-1
blastp_pdb 2jkt_U 1 324 + 324 Gaps:11 74.71 435 50.15 2e-110 mol:protein length:435 AP-2 COMPLEX SUBUNIT MU-1
blastp_pdb 2jkt_M 1 324 + 324 Gaps:11 74.71 435 50.15 2e-110 mol:protein length:435 AP-2 COMPLEX SUBUNIT MU-1
blastp_pdb 2jkr_U 1 324 + 324 Gaps:11 74.71 435 50.15 2e-110 mol:protein length:435 AP-2 COMPLEX SUBUNIT MU-1
blastp_pdb 2jkr_M 1 324 + 324 Gaps:11 74.71 435 50.15 2e-110 mol:protein length:435 AP-2 COMPLEX SUBUNIT MU-1
blastp_pdb 2bp5_M 1 324 + 324 Gaps:11 74.71 435 50.15 2e-110 mol:protein length:435 CLATHRIN COAT ASSEMBLY PROTEIN AP50
blastp_pdb 2xa7_M 1 324 + 324 Gaps:22 75.34 446 47.92 6e-108 mol:protein length:446 AP-2 COMPLEX SUBUNIT MU
blastp_pdb 1bw8_A 52 324 + 273 Gaps:6 84.42 321 50.18 2e-92 mol:protein length:321 PROTEIN (MU2 ADAPTIN SUBUNIT)
blastp_pdb 1i31_A 52 324 + 273 Gaps:6 86.31 314 50.18 2e-92 mol:protein length:314 CLATHRIN COAT ASSEMBLY PROTEIN AP50
blastp_pdb 1w63_V 9 324 + 316 Gaps:15 71.16 423 47.84 3e-87 mol:protein length:423 ADAPTOR-RELATED PROTEIN COMPLEX 1 MU 1 SUBUN
blastp_uniprot_sprot sp|O23140|AP2M_ARATH 10 324 + 315 none 71.92 438 94.29 0.0 AP-2 complex subunit mu OS Arabidopsis thaliana GN AP2M PE 1 SV 1
blastp_uniprot_sprot sp|P54672|AP2M_DICDI 5 324 + 320 Gaps:11 74.94 439 53.80 3e-124 AP-2 complex subunit mu OS Dictyostelium discoideum GN apm2 PE 2 SV 2
blastp_uniprot_sprot sp|P84092|AP2M1_RAT 1 324 + 324 Gaps:11 74.71 435 50.15 8e-110 AP-2 complex subunit mu OS Rattus norvegicus GN Ap2m1 PE 1 SV 1
blastp_uniprot_sprot sp|P84091|AP2M1_MOUSE 1 324 + 324 Gaps:11 74.71 435 50.15 8e-110 AP-2 complex subunit mu OS Mus musculus GN Ap2m1 PE 1 SV 1
blastp_uniprot_sprot sp|Q4R706|AP2M1_MACFA 1 324 + 324 Gaps:11 74.71 435 50.15 8e-110 AP-2 complex subunit mu OS Macaca fascicularis GN AP2M1 PE 2 SV 1
blastp_uniprot_sprot sp|Q96CW1|AP2M1_HUMAN 1 324 + 324 Gaps:11 74.71 435 50.15 8e-110 AP-2 complex subunit mu OS Homo sapiens GN AP2M1 PE 1 SV 2
blastp_uniprot_sprot sp|Q3ZC13|AP2M1_BOVIN 1 324 + 324 Gaps:11 74.71 435 50.15 8e-110 AP-2 complex subunit mu OS Bos taurus GN AP2M1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6P856|AP2M1_XENTR 1 324 + 324 Gaps:11 74.71 435 49.85 3e-109 AP-2 complex subunit mu OS Xenopus tropicalis GN ap2m1 PE 2 SV 1
blastp_uniprot_sprot sp|Q801Q8|AP2M1_XENLA 1 324 + 324 Gaps:11 74.71 435 49.54 7e-109 AP-2 complex subunit mu OS Xenopus laevis GN ap2m1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5ZMP6|AP2M1_CHICK 1 324 + 324 Gaps:13 74.60 433 50.46 1e-108 AP-2 complex subunit mu OS Gallus gallus GN AP2M1 PE 2 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 92 112 21 PS00990 none Clathrin adaptor complexes medium chain signature 1. IPR018240
Gene3D 13 68 56 G3DSA:3.30.450.60 none none none
SUPERFAMILY 12 68 57 SSF64356 none none IPR011012
ProSiteProfiles 103 326 224 PS51072 none Mu homology domain (MHD) profile. IPR028565
SUPERFAMILY 92 324 233 SSF49447 none none IPR028565
PANTHER 2 324 323 PTHR11998 none none none
PRINTS 283 294 12 PR00314 none Clathrin coat assembly protein signature IPR001392
PRINTS 243 258 16 PR00314 none Clathrin coat assembly protein signature IPR001392
PRINTS 174 201 28 PR00314 none Clathrin coat assembly protein signature IPR001392
PRINTS 94 122 29 PR00314 none Clathrin coat assembly protein signature IPR001392
PRINTS 28 55 28 PR00314 none Clathrin coat assembly protein signature IPR001392
PIRSF 1 326 326 PIRSF005992 none none IPR001392
Pfam 93 324 232 PF00928 none Adaptor complexes medium subunit family IPR008968
Gene3D 93 259 167 G3DSA:2.60.40.1170 none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 24   Secretory pathway 4 0.683 0.027 NON-PLANT 24