Protein : Qrob_P0023100.2 Q. robur
Protein Identifier  ? Qrob_P0023100.2 Organism . Name  Quercus robur
Score  53.5 Score Type  egn
Protein Description  (M=84) PF00646//PF08268 - F-box domain // F-box associated domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 396  
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Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sly:101257310 2 385 + 384 Gaps:33 97.40 385 40.80 6e-67 F-box protein At3g07870-like
blastp_kegg lcl|sot:102602147 1 382 + 382 Gaps:28 95.17 393 39.30 1e-63 F-box protein At3g07870-like
blastp_kegg lcl|fve:101302682 2 378 + 377 Gaps:34 97.86 373 39.45 4e-62 F-box protein At3g07870-like
blastp_kegg lcl|sot:102592783 2 384 + 383 Gaps:34 97.14 384 39.95 1e-61 F-box/kelch-repeat protein At3g06240-like
blastp_kegg lcl|pxb:103945397 1 378 + 378 Gaps:42 99.46 370 38.86 9e-59 F-box protein At3g07870-like
blastp_kegg lcl|mdm:103446632 1 378 + 378 Gaps:42 99.46 370 38.59 1e-58 F-box protein At3g07870-like
blastp_kegg lcl|tcc:TCM_031361 1 384 + 384 Gaps:44 93.97 398 42.25 2e-58 F-box and associated interaction domains-containing protein putative isoform 1
blastp_kegg lcl|pxb:103928849 1 381 + 381 Gaps:51 98.69 381 38.56 9e-58 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|mdm:103426160 1 381 + 381 Gaps:53 98.69 381 38.83 1e-57 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|mdm:103405650 1 381 + 381 Gaps:53 98.69 381 38.83 1e-57 F-box/kelch-repeat protein At3g23880-like
blastp_uniprot_sprot sp|Q9LIR8|FBK67_ARATH 5 344 + 340 Gaps:32 87.91 364 30.94 5e-26 F-box/kelch-repeat protein At3g23880 OS Arabidopsis thaliana GN At3g23880 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GXC7|FBK50_ARATH 5 374 + 370 Gaps:67 89.70 427 30.29 4e-25 F-box/kelch-repeat protein At3g06240 OS Arabidopsis thaliana GN At3g06240 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SUY0|FB244_ARATH 6 391 + 386 Gaps:71 93.78 402 30.24 4e-20 F-box protein At4g22390 OS Arabidopsis thaliana GN At4g22390 PE 2 SV 3
blastp_uniprot_sprot sp|Q9SS35|FB137_ARATH 5 362 + 358 Gaps:49 87.15 389 29.79 2e-18 Putative F-box protein At3g10240 OS Arabidopsis thaliana GN At3g10240 PE 4 SV 1
blastp_uniprot_sprot sp|Q9SU30|CPR30_ARATH 5 375 + 371 Gaps:85 88.62 413 30.33 5e-18 F-box protein CPR30 OS Arabidopsis thaliana GN CPR30 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SFC7|FB135_ARATH 5 381 + 377 Gaps:69 93.05 417 26.55 2e-17 F-box protein At3g07870 OS Arabidopsis thaliana GN At3g07870 PE 2 SV 1
blastp_uniprot_sprot sp|O49565|FB239_ARATH 3 307 + 305 Gaps:46 66.91 417 30.47 4e-17 Putative F-box protein At4g21240 OS Arabidopsis thaliana GN At4g21240 PE 4 SV 1
blastp_uniprot_sprot sp|Q9FZF8|FB44_ARATH 5 257 + 253 Gaps:28 58.87 389 32.31 4e-16 Putative F-box protein At1g47790 OS Arabidopsis thaliana GN At1g47790 PE 4 SV 1
blastp_uniprot_sprot sp|Q9LU24|FB145_ARATH 1 316 + 316 Gaps:51 75.83 360 31.87 5e-16 Putative F-box protein At3g16210 OS Arabidopsis thaliana GN At3g16210 PE 4 SV 1
blastp_uniprot_sprot sp|Q9SY20|FB20_ARATH 3 309 + 307 Gaps:57 74.69 399 30.20 1e-15 F-box protein At1g30790 OS Arabidopsis thaliana GN At1g30790 PE 2 SV 2
rpsblast_cdd gnl|CDD|162458 109 350 + 242 Gaps:26 100.00 230 23.48 5e-20 TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646) a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
rpsblast_cdd gnl|CDD|197608 5 41 + 37 none 90.24 41 56.76 1e-06 smart00256 FBOX A Receptor for Ubiquitination Targets.

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 2 349 348 PTHR31790:SF2 none none none
SMART 5 45 41 SM00256 none A Receptor for Ubiquitination Targets IPR001810
Gene3D 3 38 36 G3DSA:1.20.1280.50 none none none
Pfam 5 39 35 PF00646 none F-box domain IPR001810
TIGRFAM 110 348 239 TIGR01640 none F_box_assoc_1: F-box protein interaction domain IPR017451
ProSiteProfiles 1 49 49 PS50181 none F-box domain profile. IPR001810
SUPERFAMILY 3 79 77 SSF81383 none none IPR001810
Pfam 222 328 107 PF08268 none F-box associated domain IPR013187
PANTHER 2 349 348 PTHR31790 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4

0 Targeting