Protein : Qrob_P0023080.2 Q. robur
Protein Identifier  ? Qrob_P0023080.2 Organism . Name  Quercus robur
Score  4.1 Score Type  egn
Protein Description  (M=55) PF00646//PF07734 - F-box domain // F-box associated Gene Prediction Quality  validated
Protein length 

Sequence

Length: 348  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sot:102602147 8 339 + 332 Gaps:35 86.77 393 36.36 1e-47 F-box protein At3g07870-like
blastp_kegg lcl|sly:101257310 5 338 + 334 Gaps:45 89.09 385 38.19 2e-46 F-box protein At3g07870-like
blastp_kegg lcl|rcu:RCOM_0174350 1 340 + 340 Gaps:33 91.03 379 35.36 7e-45 hypothetical protein
blastp_kegg lcl|fve:101302682 5 347 + 343 Gaps:37 93.30 373 34.48 8e-45 F-box protein At3g07870-like
blastp_kegg lcl|sot:102592783 5 338 + 334 Gaps:38 89.06 384 35.67 7e-44 F-box/kelch-repeat protein At3g06240-like
blastp_kegg lcl|rcu:RCOM_0822970 1 346 + 346 Gaps:36 96.50 371 35.20 5e-43 hypothetical protein
blastp_kegg lcl|tcc:TCM_031361 1 340 + 340 Gaps:47 87.19 398 37.75 6e-42 F-box and associated interaction domains-containing protein putative isoform 1
blastp_kegg lcl|mdm:103417310 1 347 + 347 Gaps:49 95.68 370 34.75 4e-41 F-box protein At3g07870-like
blastp_kegg lcl|cic:CICLE_v10030186mg 1 344 + 344 Gaps:47 89.08 412 32.43 2e-40 hypothetical protein
blastp_kegg lcl|mdm:103405555 1 347 + 347 Gaps:49 95.68 370 34.46 2e-40 F-box protein At3g07870-like
blastp_uniprot_sprot sp|Q9SS35|FB137_ARATH 5 330 + 326 Gaps:45 82.52 389 27.41 7e-18 Putative F-box protein At3g10240 OS Arabidopsis thaliana GN At3g10240 PE 4 SV 1
blastp_uniprot_sprot sp|Q9SU30|CPR30_ARATH 5 338 + 334 Gaps:58 83.78 413 28.32 3e-17 F-box protein CPR30 OS Arabidopsis thaliana GN CPR30 PE 1 SV 2
blastp_uniprot_sprot sp|Q8GXC7|FBK50_ARATH 5 340 + 336 Gaps:86 85.25 427 29.40 1e-16 F-box/kelch-repeat protein At3g06240 OS Arabidopsis thaliana GN At3g06240 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPS1|FB94_ARATH 5 269 + 265 Gaps:44 88.32 334 28.14 1e-16 Putative F-box protein At2g02030 OS Arabidopsis thaliana GN At2g02030 PE 4 SV 1
blastp_uniprot_sprot sp|Q9FZF8|FB44_ARATH 5 241 + 237 Gaps:27 59.64 389 28.02 3e-16 Putative F-box protein At1g47790 OS Arabidopsis thaliana GN At1g47790 PE 4 SV 1
blastp_uniprot_sprot sp|Q9SXA0|FB42_ARATH 5 280 + 276 Gaps:30 68.03 391 28.95 3e-15 Putative F-box protein At1g47730 OS Arabidopsis thaliana GN At1g47730 PE 4 SV 1
blastp_uniprot_sprot sp|Q9FK54|FB260_ARATH 5 261 + 257 Gaps:31 63.32 379 27.92 2e-14 F-box protein At5g18160 OS Arabidopsis thaliana GN At5g18160 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M0Q9|FB223_ARATH 3 310 + 308 Gaps:34 76.24 383 27.05 5e-14 Putative F-box protein At4g09190 OS Arabidopsis thaliana GN At4g09190 PE 4 SV 1
blastp_uniprot_sprot sp|Q9C6J3|FB52_ARATH 6 244 + 239 Gaps:31 60.10 396 28.15 8e-14 Putative F-box protein At1g50870 OS Arabidopsis thaliana GN At1g50870 PE 4 SV 1
blastp_uniprot_sprot sp|Q9LUI8|FBK65_ARATH 1 297 + 297 Gaps:29 77.42 372 27.43 9e-14 Putative F-box/kelch-repeat protein At3g22730 OS Arabidopsis thaliana GN At3g22730 PE 4 SV 1
rpsblast_cdd gnl|CDD|162458 105 332 + 228 Gaps:35 99.57 230 24.02 5e-22 TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646) a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
rpsblast_cdd gnl|CDD|201368 2 47 + 46 none 95.83 48 36.96 6e-07 pfam00646 F-box F-box domain. This domain is approximately 50 amino acids long and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts such as polyubiquitination transcription elongation centromere binding and translational repression.

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 1 49 49 PS50181 none F-box domain profile. IPR001810
SUPERFAMILY 87 128 42 SSF81383 none none IPR001810
SUPERFAMILY 1 51 51 SSF81383 none none IPR001810
Gene3D 2 40 39 G3DSA:1.20.1280.50 none none none
TIGRFAM 108 332 225 TIGR01640 none F_box_assoc_1: F-box protein interaction domain IPR017451
PANTHER 4 300 297 PTHR32133 none none none
Pfam 202 300 99 PF07734 none F-box associated IPR006527
Pfam 2 41 40 PF00646 none F-box domain IPR001810
SMART 5 45 41 SM00256 none A Receptor for Ubiquitination Targets IPR001810

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4

0 Targeting