Protein : Qrob_P0023060.2 Q. robur
Protein Identifier  ? Qrob_P0023060.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=55) PF00646//PF07734 - F-box domain // F-box associated Gene Prediction Quality  validated
Protein length 

Sequence

Length: 423  
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Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103945397 4 368 + 365 Gaps:37 98.92 370 37.98 2e-61 F-box protein At3g07870-like
blastp_kegg lcl|mdm:103446632 4 368 + 365 Gaps:31 98.92 370 37.98 6e-58 F-box protein At3g07870-like
blastp_kegg lcl|mdm:103417310 4 368 + 365 Gaps:31 98.92 370 37.70 1e-57 F-box protein At3g07870-like
blastp_kegg lcl|mdm:103405555 4 368 + 365 Gaps:31 98.92 370 37.43 7e-57 F-box protein At3g07870-like
blastp_kegg lcl|fve:101302682 4 368 + 365 Gaps:25 97.59 373 36.26 1e-56 F-box protein At3g07870-like
blastp_kegg lcl|sot:102602147 5 370 + 366 Gaps:25 93.89 393 36.59 2e-55 F-box protein At3g07870-like
blastp_kegg lcl|mdm:103426160 4 373 + 370 Gaps:34 98.69 381 35.64 4e-55 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|mdm:103405650 4 373 + 370 Gaps:34 98.69 381 35.64 4e-55 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|pxb:103928849 4 373 + 370 Gaps:42 98.69 381 35.90 1e-54 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|pxb:103940907 4 373 + 370 Gaps:42 98.69 381 35.64 6e-54 F-box/kelch-repeat protein At3g23880-like
blastp_uniprot_sprot sp|Q8GXC7|FBK50_ARATH 6 364 + 359 Gaps:68 89.70 427 31.33 4e-24 F-box/kelch-repeat protein At3g06240 OS Arabidopsis thaliana GN At3g06240 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SU30|CPR30_ARATH 3 392 + 390 Gaps:42 96.37 413 27.64 7e-24 F-box protein CPR30 OS Arabidopsis thaliana GN CPR30 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LIR8|FBK67_ARATH 6 372 + 367 Gaps:54 96.43 364 30.20 3e-21 F-box/kelch-repeat protein At3g23880 OS Arabidopsis thaliana GN At3g23880 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FK54|FB260_ARATH 6 291 + 286 Gaps:35 67.28 379 31.37 5e-20 F-box protein At5g18160 OS Arabidopsis thaliana GN At5g18160 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FZF8|FB44_ARATH 6 250 + 245 Gaps:33 58.61 389 32.89 7e-20 Putative F-box protein At1g47790 OS Arabidopsis thaliana GN At1g47790 PE 4 SV 1
blastp_uniprot_sprot sp|O49565|FB239_ARATH 3 274 + 272 Gaps:34 62.35 417 32.31 1e-19 Putative F-box protein At4g21240 OS Arabidopsis thaliana GN At4g21240 PE 4 SV 1
blastp_uniprot_sprot sp|Q9SFC7|FB135_ARATH 3 347 + 345 Gaps:74 88.01 417 28.88 8e-19 F-box protein At3g07870 OS Arabidopsis thaliana GN At3g07870 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SS35|FB137_ARATH 6 276 + 271 Gaps:18 65.04 389 29.64 5e-18 Putative F-box protein At3g10240 OS Arabidopsis thaliana GN At3g10240 PE 4 SV 1
blastp_uniprot_sprot sp|Q9LFW0|FB257_ARATH 6 345 + 340 Gaps:29 76.03 438 27.33 3e-17 Putative F-box protein At5g15660 OS Arabidopsis thaliana GN At5g15660 PE 4 SV 1
blastp_uniprot_sprot sp|Q9LUP9|FB152_ARATH 3 304 + 302 Gaps:27 79.41 374 27.95 1e-16 Putative F-box protein At3g17480 OS Arabidopsis thaliana GN At3g17480 PE 4 SV 1
rpsblast_cdd gnl|CDD|162458 108 340 + 233 Gaps:25 100.00 230 23.48 2e-23 TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646) a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
rpsblast_cdd gnl|CDD|201368 1 48 + 48 none 100.00 48 45.83 4e-07 pfam00646 F-box F-box domain. This domain is approximately 50 amino acids long and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts such as polyubiquitination transcription elongation centromere binding and translational repression.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 421 422 2 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 3 41 39 G3DSA:1.20.1280.50 none none none
SMART 6 45 40 SM00256 none A Receptor for Ubiquitination Targets IPR001810
ProSiteProfiles 1 50 50 PS50181 none F-box domain profile. IPR001810
Pfam 215 307 93 PF07734 none F-box associated IPR006527
Phobius 397 420 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 111 338 228 TIGR01640 none F_box_assoc_1: F-box protein interaction domain IPR017451
Phobius 1 396 396 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 3 52 50 SSF81383 none none IPR001810
PANTHER 6 306 301 PTHR32133 none none none
Pfam 5 40 36 PF00646 none F-box domain IPR001810

1 Localization

Analysis Start End Length
TMHMM 397 419 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4

0 Targeting