Protein : Qrob_P0023050.2 Q. robur
Protein Identifier  ? Qrob_P0023050.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=302) PF00646 - F-box domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 362  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103446632 1 344 + 344 Gaps:52 99.46 370 36.41 1e-48 F-box protein At3g07870-like
blastp_kegg lcl|pxb:103945397 1 344 + 344 Gaps:52 99.46 370 35.87 4e-48 F-box protein At3g07870-like
blastp_kegg lcl|sot:102602147 4 348 + 345 Gaps:54 94.40 393 34.50 9e-48 F-box protein At3g07870-like
blastp_kegg lcl|mdm:103417310 1 344 + 344 Gaps:52 99.46 370 36.41 2e-47 F-box protein At3g07870-like
blastp_kegg lcl|mdm:103405555 1 344 + 344 Gaps:52 99.46 370 35.87 7e-47 F-box protein At3g07870-like
blastp_kegg lcl|rcu:RCOM_0174350 1 351 + 351 Gaps:56 98.42 379 35.66 1e-46 hypothetical protein
blastp_kegg lcl|sly:101257310 4 351 + 348 Gaps:51 96.88 385 35.92 2e-46 F-box protein At3g07870-like
blastp_kegg lcl|fve:101302682 3 344 + 342 Gaps:54 97.59 373 35.16 7e-46 F-box protein At3g07870-like
blastp_kegg lcl|sot:102592783 4 350 + 347 Gaps:50 96.61 384 35.58 4e-45 F-box/kelch-repeat protein At3g06240-like
blastp_kegg lcl|tcc:TCM_031361 1 350 + 350 Gaps:62 93.97 398 36.36 1e-44 F-box and associated interaction domains-containing protein putative isoform 1
blastp_uniprot_sprot sp|Q9LIR8|FBK67_ARATH 5 276 + 272 Gaps:64 79.12 364 30.90 6e-20 F-box/kelch-repeat protein At3g23880 OS Arabidopsis thaliana GN At3g23880 PE 2 SV 1
blastp_uniprot_sprot sp|Q3ECE2|FB85_ARATH 2 199 + 198 Gaps:12 53.66 369 31.82 4e-17 Putative F-box protein At1g70960 OS Arabidopsis thaliana GN At1g70960 PE 4 SV 1
blastp_uniprot_sprot sp|Q9SS35|FB137_ARATH 5 221 + 217 Gaps:32 52.70 389 31.22 2e-16 Putative F-box protein At3g10240 OS Arabidopsis thaliana GN At3g10240 PE 4 SV 1
blastp_uniprot_sprot sp|Q9LFW0|FB257_ARATH 2 312 + 311 Gaps:42 75.11 438 27.96 3e-16 Putative F-box protein At5g15660 OS Arabidopsis thaliana GN At5g15660 PE 4 SV 1
blastp_uniprot_sprot sp|Q9FZF8|FB44_ARATH 5 221 + 217 Gaps:14 52.19 389 31.53 3e-16 Putative F-box protein At1g47790 OS Arabidopsis thaliana GN At1g47790 PE 4 SV 1
blastp_uniprot_sprot sp|O49565|FB239_ARATH 1 245 + 245 Gaps:27 54.20 417 32.30 1e-14 Putative F-box protein At4g21240 OS Arabidopsis thaliana GN At4g21240 PE 4 SV 1
blastp_uniprot_sprot sp|Q9SU30|CPR30_ARATH 5 276 + 272 Gaps:76 72.64 413 31.00 1e-14 F-box protein CPR30 OS Arabidopsis thaliana GN CPR30 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FK54|FB260_ARATH 5 221 + 217 Gaps:34 50.92 379 31.61 6e-14 F-box protein At5g18160 OS Arabidopsis thaliana GN At5g18160 PE 2 SV 1
blastp_uniprot_sprot sp|Q9T0J4|FB249_ARATH 3 221 + 219 Gaps:22 50.94 426 30.88 5e-13 Putative F-box protein At4g38870 OS Arabidopsis thaliana GN At4g38870 PE 4 SV 1
blastp_uniprot_sprot sp|Q9C6J3|FB52_ARATH 6 135 + 130 Gaps:1 32.58 396 34.88 5e-13 Putative F-box protein At1g50870 OS Arabidopsis thaliana GN At1g50870 PE 4 SV 1
rpsblast_cdd gnl|CDD|162458 104 281 + 178 Gaps:40 83.48 230 21.88 2e-17 TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646) a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 2 223 222 PTHR31790:SF2 none none none
SMART 5 45 41 SM00256 none A Receptor for Ubiquitination Targets IPR001810
Pfam 5 40 36 PF00646 none F-box domain IPR001810
PANTHER 2 223 222 PTHR31790 none none none
TIGRFAM 105 225 121 TIGR01640 none F_box_assoc_1: F-box protein interaction domain IPR017451
ProSiteProfiles 1 49 49 PS50181 none F-box domain profile. IPR001810
Gene3D 2 40 39 G3DSA:1.20.1280.50 none none none
SUPERFAMILY 1 51 51 SSF81383 none none IPR001810

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4

0 Targeting