Protein : Qrob_P0023040.2 Q. robur
Protein Identifier  ? Qrob_P0023040.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=84) PF00646//PF08268 - F-box domain // F-box associated domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 394  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_031361 1 392 + 392 Gaps:64 93.97 398 41.71 1e-52 F-box and associated interaction domains-containing protein putative isoform 1
blastp_kegg lcl|fve:101302682 2 386 + 385 Gaps:54 97.86 373 35.34 1e-48 F-box protein At3g07870-like
blastp_kegg lcl|mdm:103426160 1 389 + 389 Gaps:51 98.69 381 34.31 1e-48 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|mdm:103405650 1 389 + 389 Gaps:51 98.69 381 34.31 1e-48 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|pxb:103928849 1 389 + 389 Gaps:57 98.69 381 34.84 4e-48 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|pxb:103940907 1 389 + 389 Gaps:59 98.69 381 34.57 1e-47 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|pop:POPTR_0011s12180g 1 388 + 388 Gaps:69 96.33 381 38.42 1e-46 POPTRDRAFT_568920 hypothetical protein
blastp_kegg lcl|pxb:103945397 1 386 + 386 Gaps:54 99.46 370 35.60 1e-46 F-box protein At3g07870-like
blastp_kegg lcl|mdm:103417310 1 386 + 386 Gaps:52 99.46 370 35.60 5e-46 F-box protein At3g07870-like
blastp_kegg lcl|pmum:103328263 1 386 + 386 Gaps:63 97.89 379 37.20 6e-46 F-box/kelch-repeat protein At3g23880-like
blastp_uniprot_sprot sp|Q9SU30|CPR30_ARATH 5 361 + 357 Gaps:69 83.78 413 32.66 2e-23 F-box protein CPR30 OS Arabidopsis thaliana GN CPR30 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LIR8|FBK67_ARATH 5 350 + 346 Gaps:46 87.91 364 31.56 2e-22 F-box/kelch-repeat protein At3g23880 OS Arabidopsis thaliana GN At3g23880 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SS35|FB137_ARATH 5 292 + 288 Gaps:57 65.04 389 33.99 5e-20 Putative F-box protein At3g10240 OS Arabidopsis thaliana GN At3g10240 PE 4 SV 1
blastp_uniprot_sprot sp|Q9FZF8|FB44_ARATH 2 289 + 288 Gaps:43 64.52 389 31.47 4e-19 Putative F-box protein At1g47790 OS Arabidopsis thaliana GN At1g47790 PE 4 SV 1
blastp_uniprot_sprot sp|Q8GXC7|FBK50_ARATH 5 382 + 378 Gaps:71 89.70 427 28.46 1e-16 F-box/kelch-repeat protein At3g06240 OS Arabidopsis thaliana GN At3g06240 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C6J3|FB52_ARATH 6 271 + 266 Gaps:48 59.60 396 32.20 2e-16 Putative F-box protein At1g50870 OS Arabidopsis thaliana GN At1g50870 PE 4 SV 1
blastp_uniprot_sprot sp|O49565|FB239_ARATH 3 313 + 311 Gaps:54 66.91 417 30.82 5e-15 Putative F-box protein At4g21240 OS Arabidopsis thaliana GN At4g21240 PE 4 SV 1
blastp_uniprot_sprot sp|Q9FK54|FB260_ARATH 5 289 + 285 Gaps:56 63.06 379 33.47 8e-15 F-box protein At5g18160 OS Arabidopsis thaliana GN At5g18160 PE 2 SV 1
blastp_uniprot_sprot sp|Q9T0J4|FB249_ARATH 2 312 + 311 Gaps:58 65.02 426 28.52 1e-14 Putative F-box protein At4g38870 OS Arabidopsis thaliana GN At4g38870 PE 4 SV 1
blastp_uniprot_sprot sp|O49421|FB238_ARATH 5 280 + 276 Gaps:54 64.72 411 29.32 1e-14 F-box protein At4g19940 OS Arabidopsis thaliana GN At4g19940 PE 4 SV 1
rpsblast_cdd gnl|CDD|162458 104 323 + 220 Gaps:37 82.17 230 28.57 1e-20 TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646) a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 3 134 132 PTHR31790:SF2 none none none
ProSiteProfiles 1 49 49 PS50181 none F-box domain profile. IPR001810
Pfam 5 39 35 PF00646 none F-box domain IPR001810
Gene3D 3 40 38 G3DSA:1.20.1280.50 none none none
TIGRFAM 104 343 240 TIGR01640 none F_box_assoc_1: F-box protein interaction domain IPR017451
Pfam 232 314 83 PF08268 none F-box associated domain IPR013187
SUPERFAMILY 3 69 67 SSF81383 none none IPR001810
PANTHER 3 134 132 PTHR31790 none none none
PANTHER 151 320 170 PTHR31790 none none none
PANTHER 151 320 170 PTHR31790:SF2 none none none
SMART 5 44 40 SM00256 none A Receptor for Ubiquitination Targets IPR001810

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4

0 Targeting