Protein : Qrob_P0023020.2 Q. robur
Protein Identifier  ? Qrob_P0023020.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=55) PF00646//PF07734 - F-box domain // F-box associated Gene Prediction Quality  validated
Protein length 

Sequence

Length: 387  
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Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101302682 2 371 + 370 Gaps:27 97.86 373 40.82 1e-76 F-box protein At3g07870-like
blastp_kegg lcl|rcu:RCOM_0174350 1 378 + 378 Gaps:33 98.42 379 41.82 7e-69 hypothetical protein
blastp_kegg lcl|pxb:103945397 1 371 + 371 Gaps:41 99.46 370 39.40 9e-68 F-box protein At3g07870-like
blastp_kegg lcl|mdm:103446632 1 371 + 371 Gaps:41 99.46 370 39.13 3e-66 F-box protein At3g07870-like
blastp_kegg lcl|mdm:103417310 1 371 + 371 Gaps:41 99.46 370 39.13 3e-65 F-box protein At3g07870-like
blastp_kegg lcl|mdm:103405555 1 371 + 371 Gaps:41 99.46 370 38.86 6e-65 F-box protein At3g07870-like
blastp_kegg lcl|pxb:103928849 1 376 + 376 Gaps:28 99.21 381 37.30 2e-64 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|pmum:103328263 1 371 + 371 Gaps:30 97.89 379 39.89 2e-64 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|pper:PRUPE_ppa018725mg 1 371 + 371 Gaps:34 97.91 383 39.47 8e-64 hypothetical protein
blastp_kegg lcl|pxb:103940907 1 376 + 376 Gaps:38 99.21 381 37.30 9e-64 F-box/kelch-repeat protein At3g23880-like
blastp_uniprot_sprot sp|Q9FZF8|FB44_ARATH 5 278 + 274 Gaps:57 69.15 389 35.69 4e-25 Putative F-box protein At1g47790 OS Arabidopsis thaliana GN At1g47790 PE 4 SV 1
blastp_uniprot_sprot sp|Q8GXC7|FBK50_ARATH 5 367 + 363 Gaps:64 89.70 427 28.98 3e-24 F-box/kelch-repeat protein At3g06240 OS Arabidopsis thaliana GN At3g06240 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SU30|CPR30_ARATH 5 305 + 301 Gaps:37 72.64 413 31.33 3e-23 F-box protein CPR30 OS Arabidopsis thaliana GN CPR30 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SS35|FB137_ARATH 5 265 + 261 Gaps:33 61.70 389 34.58 4e-23 Putative F-box protein At3g10240 OS Arabidopsis thaliana GN At3g10240 PE 4 SV 1
blastp_uniprot_sprot sp|Q9C6J3|FB52_ARATH 6 355 + 350 Gaps:58 85.35 396 28.70 2e-22 Putative F-box protein At1g50870 OS Arabidopsis thaliana GN At1g50870 PE 4 SV 1
blastp_uniprot_sprot sp|Q9FGS3|FB287_ARATH 5 309 + 305 Gaps:65 71.15 357 36.61 4e-22 Putative F-box protein At5g50220 OS Arabidopsis thaliana GN At5g50220 PE 4 SV 1
blastp_uniprot_sprot sp|Q9LIR8|FBK67_ARATH 5 326 + 322 Gaps:25 84.89 364 29.77 4e-21 F-box/kelch-repeat protein At3g23880 OS Arabidopsis thaliana GN At3g23880 PE 2 SV 1
blastp_uniprot_sprot sp|O49565|FB239_ARATH 3 250 + 248 Gaps:27 57.31 417 31.38 6e-20 Putative F-box protein At4g21240 OS Arabidopsis thaliana GN At4g21240 PE 4 SV 1
blastp_uniprot_sprot sp|Q9SUY0|FB244_ARATH 6 384 + 379 Gaps:56 93.78 402 27.06 2e-19 F-box protein At4g22390 OS Arabidopsis thaliana GN At4g22390 PE 2 SV 3
blastp_uniprot_sprot sp|Q9LU24|FB145_ARATH 1 348 + 348 Gaps:66 88.89 360 28.12 4e-19 Putative F-box protein At3g16210 OS Arabidopsis thaliana GN At3g16210 PE 4 SV 1
rpsblast_cdd gnl|CDD|162458 105 343 + 239 Gaps:25 100.00 230 26.96 2e-22 TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646) a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
rpsblast_cdd gnl|CDD|201368 5 47 + 43 none 89.58 48 39.53 5e-07 pfam00646 F-box F-box domain. This domain is approximately 50 amino acids long and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts such as polyubiquitination transcription elongation centromere binding and translational repression.

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 3 40 38 G3DSA:1.20.1280.50 none none none
Pfam 5 41 37 PF00646 none F-box domain IPR001810
Pfam 214 308 95 PF07734 none F-box associated IPR006527
PANTHER 2 350 349 PTHR31790:SF2 none none none
SMART 5 45 41 SM00256 none A Receptor for Ubiquitination Targets IPR001810
ProSiteProfiles 1 50 50 PS50181 none F-box domain profile. IPR001810
SUPERFAMILY 3 73 71 SSF81383 none none IPR001810
PANTHER 2 350 349 PTHR31790 none none none
TIGRFAM 106 328 223 TIGR01640 none F_box_assoc_1: F-box protein interaction domain IPR017451

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4

0 Targeting