Protein : Qrob_P0021290.2 Q. robur
Protein Identifier  ? Qrob_P0021290.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR17985 - SER/THR-RICH PROTEIN T10 IN DGCR REGION Gene Prediction Quality  validated
Protein length 

Sequence

Length: 245  
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0 Synonyms

0 GO Terms

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102619385 6 243 + 238 none 89.47 266 80.25 2e-141 transport and Golgi organization 2 homolog
blastp_kegg lcl|tcc:TCM_034403 6 243 + 238 Gaps:1 89.51 267 78.24 2e-136 Ser/Thr-rich protein T10 in DGCR region
blastp_kegg lcl|fve:101301012 6 243 + 238 none 89.47 266 74.37 2e-134 ser/Thr-rich protein T10 in DGCR region-like
blastp_kegg lcl|mdm:103420132 6 242 + 237 Gaps:1 86.55 275 76.05 2e-132 transport and Golgi organization 2 homolog
blastp_kegg lcl|mdm:103436734 6 242 + 237 Gaps:1 86.55 275 76.05 4e-132 transport and Golgi organization 2 homolog
blastp_kegg lcl|pxb:103955529 6 242 + 237 Gaps:1 86.55 275 74.79 6e-130 transport and Golgi organization 2 homolog
blastp_kegg lcl|rcu:RCOM_1601200 4 244 + 241 Gaps:1 97.58 248 73.14 1e-129 Ser/Thr-rich protein T10 in DGCR region putative
blastp_kegg lcl|mdm:103436737 6 242 + 237 Gaps:2 86.59 276 75.73 2e-129 transport and Golgi organization 2 homolog
blastp_kegg lcl|gmx:100820362 6 243 + 238 none 87.18 273 71.43 1e-126 ser/Thr-rich protein T10 in DGCR region-like
blastp_kegg lcl|pvu:PHAVU_009G029500g 6 243 + 238 none 89.47 266 70.17 3e-123 hypothetical protein
blastp_uniprot_sprot sp|P54797|TNG2_MOUSE 12 240 + 229 Gaps:25 85.51 276 34.32 5e-27 Transport and Golgi organization 2 homolog OS Mus musculus GN Tango2 PE 2 SV 1
blastp_uniprot_sprot sp|Q29RZ5|TNG2_BOVIN 12 240 + 229 Gaps:27 85.51 276 32.63 4e-25 Transport and Golgi organization protein 2 homolog OS Bos taurus GN TANGO2 PE 2 SV 1
blastp_uniprot_sprot sp|Q6ICL3|TNG2_HUMAN 12 240 + 229 Gaps:25 85.51 276 32.63 1e-23 Transport and Golgi organization protein 2 homolog OS Homo sapiens GN TANGO2 PE 2 SV 1
rpsblast_cdd gnl|CDD|114466 6 237 + 232 Gaps:27 89.51 267 35.15 3e-41 pfam05742 NRDE NRDE protein. In eukaryotes this family is predicted to play a role in protein secretion and Golgi organisation. In plants this family includes Solanum habrochaites Cwp which is involved in water permeability in the cuticles of fruit. Mouse T10 has been found to be expressed during early embryogenesis in mice. This protein contains a conserved NRDE motif.
rpsblast_cdd gnl|CDD|33141 6 226 + 221 Gaps:22 81.85 270 33.03 4e-30 COG3332 COG3332 Uncharacterized conserved protein [Function unknown].
rpsblast_kog gnl|CDD|37553 6 240 + 235 Gaps:23 88.57 280 33.47 3e-41 KOG2342 KOG2342 KOG2342 Uncharacterized conserved protein [Function unknown].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 6 234 229 PF05742 none NRDE protein IPR008551
PANTHER 6 239 234 PTHR17985 none none IPR008551
PANTHER 6 239 234 PTHR17985:SF9 none none none

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting