Protein : Qrob_P0021010.2 Q. robur
Protein Identifier  ? Qrob_P0021010.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=4) PTHR23068 - DNA (CYTOSINE-5-)-METHYLTRANSFERASE 3-RELATED Code Enzyme  EC:2.1.1.37
Gene Prediction Quality  validated Protein length 

Sequence

Length: 595  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006306 DNA methylation The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103336233 11 589 + 579 Gaps:15 99.31 582 76.12 0.0 DNA (cytosine-5)-methyltransferase DRM2-like
blastp_kegg lcl|pmum:103329837 11 588 + 578 Gaps:14 98.63 584 77.08 0.0 DNA (cytosine-5)-methyltransferase DRM2
blastp_kegg lcl|vvi:100254189 11 588 + 578 Gaps:16 96.43 616 74.24 0.0 DNA (cytosine-5)-methyltransferase DRM2-like
blastp_kegg lcl|mdm:103442237 16 589 + 574 Gaps:42 98.67 600 73.14 0.0 DNA (cytosine-5)-methyltransferase DRM2-like
blastp_kegg lcl|pxb:103926943 16 589 + 574 Gaps:42 98.67 600 72.97 0.0 DNA (cytosine-5)-methyltransferase DRM2
blastp_kegg lcl|cmo:103487106 12 588 + 577 Gaps:14 98.46 586 75.74 0.0 DNA (cytosine-5)-methyltransferase DRM2
blastp_kegg lcl|pxb:103965834 16 589 + 574 Gaps:39 98.50 600 72.25 0.0 DNA (cytosine-5)-methyltransferase DRM2-like
blastp_kegg lcl|pxb:103963969 16 589 + 574 Gaps:39 98.50 600 72.25 0.0 DNA (cytosine-5)-methyltransferase DRM2-like
blastp_kegg lcl|tcc:TCM_016907 20 588 + 569 Gaps:59 97.33 637 70.97 0.0 DNA (Cytosine-5)-methyltransferase DRM1/2 isoform 1
blastp_kegg lcl|csv:101216406 12 588 + 577 Gaps:14 98.46 586 75.22 0.0 DNA (cytosine-5)-methyltransferase DRM2-like
blastp_pdb 2qrv_H 470 584 + 115 Gaps:14 35.59 295 36.19 1e-09 mol:protein length:295 DNA (cytosine-5)-methyltransferase 3A
blastp_pdb 2qrv_E 470 584 + 115 Gaps:14 35.59 295 36.19 1e-09 mol:protein length:295 DNA (cytosine-5)-methyltransferase 3A
blastp_pdb 2qrv_D 470 584 + 115 Gaps:14 35.59 295 36.19 1e-09 mol:protein length:295 DNA (cytosine-5)-methyltransferase 3A
blastp_pdb 2qrv_A 470 584 + 115 Gaps:14 35.59 295 36.19 1e-09 mol:protein length:295 DNA (cytosine-5)-methyltransferase 3A
blastp_uniprot_sprot sp|Q9LXE5|DRM1_ARATH 5 588 + 584 Gaps:79 97.92 624 54.01 0.0 DNA (cytosine-5)-methyltransferase DRM1 OS Arabidopsis thaliana GN DRM1 PE 3 SV 2
blastp_uniprot_sprot sp|Q9M548|DRM2_ARATH 37 588 + 552 Gaps:25 86.74 626 58.01 0.0 DNA (cytosine-5)-methyltransferase DRM2 OS Arabidopsis thaliana GN DRM2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9UBC3|DNM3B_HUMAN 470 588 + 119 Gaps:10 12.78 853 34.86 4e-09 DNA (cytosine-5)-methyltransferase 3B OS Homo sapiens GN DNMT3B PE 1 SV 1
blastp_uniprot_sprot sp|Q4W5Z4|DNM3A_CHICK 470 584 + 115 Gaps:14 11.97 877 36.19 4e-09 DNA (cytosine-5)-methyltransferase 3A OS Gallus gallus GN DNMT3A PE 2 SV 1
blastp_uniprot_sprot sp|Q1LZ53|DNM3A_RAT 470 584 + 115 Gaps:14 11.56 908 36.19 6e-09 DNA (cytosine-5)-methyltransferase 3A OS Rattus norvegicus GN Dnmt3a PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y6K1|DNM3A_HUMAN 470 584 + 115 Gaps:14 11.51 912 36.19 6e-09 DNA (cytosine-5)-methyltransferase 3A OS Homo sapiens GN DNMT3A PE 1 SV 4
blastp_uniprot_sprot sp|O88508|DNM3A_MOUSE 470 584 + 115 Gaps:14 11.56 908 36.19 6e-09 DNA (cytosine-5)-methyltransferase 3A OS Mus musculus GN Dnmt3a PE 1 SV 2
blastp_uniprot_sprot sp|P00476|MTBS_BPSPR 468 584 + 117 Gaps:13 23.69 439 37.50 1e-08 Modification methylase SPRI OS Bacillus phage SPR PE 3 SV 1
blastp_uniprot_sprot sp|O88509|DNM3B_MOUSE 470 588 + 119 Gaps:10 12.69 859 32.11 2e-08 DNA (cytosine-5)-methyltransferase 3B OS Mus musculus GN Dnmt3b PE 1 SV 2
blastp_uniprot_sprot sp|P09915|MTBR_BPRH1 470 584 + 115 Gaps:13 20.28 503 35.29 2e-07 Modification methylase Rho11sI OS Bacillus phage rho11s PE 3 SV 2
rpsblast_cdd gnl|CDD|30619 470 590 + 121 Gaps:14 32.62 328 25.23 2e-09 COG0270 Dcm Site-specific DNA methylase [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|201035 470 585 + 116 Gaps:22 30.63 320 27.55 8e-08 pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
rpsblast_cdd gnl|CDD|73191 470 584 + 115 Gaps:20 36.00 275 28.28 2e-07 cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors X chromosome inactivation imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability..

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 273 468 196 SSF53335 none none IPR029063
ProSiteProfiles 63 104 42 PS50030 none Ubiquitin-associated domain (UBA) profile. IPR015940
PANTHER 23 589 567 PTHR23068:SF3 none none none
SUPERFAMILY 471 586 116 SSF53335 none none IPR029063
Gene3D 470 588 119 G3DSA:3.40.50.150 none none IPR029063
Pfam 471 585 115 PF00145 none C-5 cytosine-specific DNA methylase none
PANTHER 23 589 567 PTHR23068 none none none
ProSiteProfiles 150 184 35 PS50030 none Ubiquitin-associated domain (UBA) profile. IPR015940
ProSiteProfiles 265 594 330 PS51680 "KEGG:00270+2.1.1.37" SAM-dependent methyltransferase DRM-type domain profile. IPR030380

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting