Protein : Qrob_P0021000.2 Q. robur
Protein Identifier  ? Qrob_P0021000.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) K12823 - ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 747  
Kegg Orthology  K12823
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1063350 1 743 + 743 Gaps:98 100.00 781 70.93 0.0 dead box ATP-dependent RNA helicase putative
blastp_kegg lcl|tcc:TCM_016908 1 732 + 732 Gaps:67 98.96 771 73.26 0.0 DEAD box RNA helicase family protein isoform 3
blastp_kegg lcl|gmx:100786511 1 731 + 731 Gaps:68 99.35 774 71.00 0.0 DEAD-box ATP-dependent RNA helicase 46-like
blastp_kegg lcl|pop:POPTR_0001s35150g 1 743 + 743 Gaps:106 100.00 793 70.11 0.0 POPTRDRAFT_1068852 hypothetical protein
blastp_kegg lcl|csv:101215674 1 731 + 731 Gaps:101 99.11 785 67.87 0.0 DEAD-box ATP-dependent RNA helicase 46-like
blastp_kegg lcl|pper:PRUPE_ppa002303mg 1 739 + 739 Gaps:84 99.85 688 78.75 0.0 hypothetical protein
blastp_kegg lcl|fve:101299689 1 731 + 731 Gaps:81 100.00 678 76.84 0.0 DEAD-box ATP-dependent RNA helicase 46-like
blastp_kegg lcl|cmo:103487108 1 731 + 731 Gaps:118 99.10 778 69.13 0.0 DEAD-box ATP-dependent RNA helicase 46
blastp_kegg lcl|pmum:103329835 1 739 + 739 Gaps:84 99.85 688 78.31 0.0 DEAD-box ATP-dependent RNA helicase 46
blastp_kegg lcl|pxb:103965833 1 664 + 664 Gaps:69 96.40 667 79.63 0.0 DEAD-box ATP-dependent RNA helicase 14-like
blastp_pdb 2i4i_A 155 556 + 402 Gaps:32 97.84 417 42.65 3e-97 mol:protein length:417 ATP-dependent RNA helicase DDX3X
blastp_pdb 2db3_D 155 553 + 399 Gaps:20 89.63 434 43.70 6e-91 mol:protein length:434 ATP-dependent RNA helicase vasa
blastp_pdb 2db3_C 155 553 + 399 Gaps:20 89.63 434 43.70 6e-91 mol:protein length:434 ATP-dependent RNA helicase vasa
blastp_pdb 2db3_B 155 553 + 399 Gaps:20 89.63 434 43.70 6e-91 mol:protein length:434 ATP-dependent RNA helicase vasa
blastp_pdb 2db3_A 155 553 + 399 Gaps:20 89.63 434 43.70 6e-91 mol:protein length:434 ATP-dependent RNA helicase vasa
blastp_pdb 3fe2_B 147 389 + 243 Gaps:18 96.28 242 54.51 2e-81 mol:protein length:242 Probable ATP-dependent RNA helicase DDX5
blastp_pdb 3fe2_A 147 389 + 243 Gaps:18 96.28 242 54.51 2e-81 mol:protein length:242 Probable ATP-dependent RNA helicase DDX5
blastp_pdb 1hv8_B 191 532 + 342 Gaps:20 89.92 367 38.48 4e-61 mol:protein length:367 PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669
blastp_pdb 1hv8_A 191 532 + 342 Gaps:20 89.92 367 38.48 4e-61 mol:protein length:367 PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669
blastp_pdb 2j0s_A 168 555 + 388 Gaps:20 90.73 410 33.33 9e-60 mol:protein length:410 ATP-DEPENDENT RNA HELICASE DDX48
blastp_uniprot_sprot sp|Q9LYJ9|RH46_ARATH 1 668 + 668 Gaps:45 100.00 645 74.11 0.0 DEAD-box ATP-dependent RNA helicase 46 OS Arabidopsis thaliana GN RH46 PE 2 SV 2
blastp_uniprot_sprot sp|Q8H136|RH14_ARATH 1 668 + 668 Gaps:61 100.00 619 74.31 0.0 DEAD-box ATP-dependent RNA helicase 14 OS Arabidopsis thaliana GN RH14 PE 1 SV 2
blastp_uniprot_sprot sp|P46942|DB10_NICSY 3 636 + 634 Gaps:67 98.35 607 74.71 0.0 ATP-dependent RNA helicase-like protein DB10 OS Nicotiana sylvestris PE 2 SV 1
blastp_uniprot_sprot sp|Q5VQL1|RH14_ORYSJ 11 603 + 593 Gaps:38 83.19 708 67.57 0.0 DEAD-box ATP-dependent RNA helicase 14 OS Oryza sativa subsp. japonica GN Os01g0172200 PE 2 SV 1
blastp_uniprot_sprot sp|Q5JKF2|RH40_ORYSJ 143 593 + 451 Gaps:16 55.68 792 76.64 0.0 DEAD-box ATP-dependent RNA helicase 40 OS Oryza sativa subsp. japonica GN Os01g0549400 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SQV1|RH40_ARATH 1 558 + 558 Gaps:15 44.12 1088 77.29 0.0 DEAD-box ATP-dependent RNA helicase 40 OS Arabidopsis thaliana GN RH40 PE 2 SV 1
blastp_uniprot_sprot sp|Q5QMN3|RH20_ORYSJ 147 555 + 409 Gaps:14 80.77 494 57.89 6e-157 DEAD-box ATP-dependent RNA helicase 20 OS Oryza sativa subsp. japonica GN Os01g0197200 PE 3 SV 2
blastp_uniprot_sprot sp|Q9C718|RH20_ARATH 142 555 + 414 Gaps:14 80.64 501 55.69 2e-152 DEAD-box ATP-dependent RNA helicase 20 OS Arabidopsis thaliana GN RH20 PE 2 SV 1
blastp_uniprot_sprot sp|Q5N7W4|RH30_ORYSJ 137 577 + 441 Gaps:18 65.32 666 54.02 1e-148 DEAD-box ATP-dependent RNA helicase 30 OS Oryza sativa subsp. japonica GN Os01g0911100 PE 2 SV 2
blastp_uniprot_sprot sp|Q8W4R3|RH30_ARATH 149 552 + 404 Gaps:14 66.67 591 55.58 3e-148 DEAD-box ATP-dependent RNA helicase 30 OS Arabidopsis thaliana GN RH30 PE 2 SV 2

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 446 517 72 PF00271 none Helicase conserved C-terminal domain IPR001650
PANTHER 142 673 532 PTHR24031:SF216 none none none
ProSiteProfiles 19 53 35 PS50020 none WW/rsp5/WWP domain profile. IPR001202
ProSiteProfiles 412 556 145 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
Gene3D 150 397 248 G3DSA:3.40.50.300 none none IPR027417
ProSitePatterns 25 51 27 PS01159 none WW/rsp5/WWP domain signature. IPR001202
SUPERFAMILY 250 534 285 SSF52540 none none IPR027417
ProSiteProfiles 167 206 40 PS51195 none DEAD-box RNA helicase Q motif profile. IPR014014
Gene3D 398 555 158 G3DSA:3.40.50.300 none none IPR027417
SMART 20 53 34 SM00456 none Domain with 2 conserved Trp (W) residues IPR001202
PANTHER 142 673 532 PTHR24031 none none none
Pfam 202 372 171 PF00270 none DEAD/DEAH box helicase IPR011545
SMART 197 400 204 SM00487 none DEAD-like helicases superfamily IPR014001
SMART 437 517 81 SM00490 none helicase superfamily c-terminal domain IPR001650
ProSiteProfiles 209 383 175 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
ProSitePatterns 329 337 9 PS00039 none DEAD-box subfamily ATP-dependent helicases signature. IPR000629
SUPERFAMILY 14 54 41 SSF51045 none none IPR001202
Pfam 21 51 31 PF00397 none WW domain IPR001202

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting