Protein : Qrob_P0020780.2 Q. robur
Protein Identifier  ? Qrob_P0020780.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=34) PF03101 - FAR1 DNA-binding domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 281  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sly:101245997 48 160 + 113 Gaps:6 27.75 400 45.95 6e-20 protein FAR1-RELATED SEQUENCE 5-like
blastp_kegg lcl|sot:102605658 48 160 + 113 Gaps:4 32.74 339 41.44 3e-18 protein FAR1-RELATED SEQUENCE 5-like
blastp_kegg lcl|pop:POPTR_0005s27900g 48 160 + 113 Gaps:3 15.82 708 43.75 3e-18 hypothetical protein
blastp_kegg lcl|tcc:TCM_034806 48 160 + 113 Gaps:3 15.03 745 42.86 1e-17 Far1-related sequence 5 isoform 1
blastp_kegg lcl|mtr:MTR_1g099400 48 160 + 113 Gaps:14 5.08 1950 47.47 2e-17 Cysteine-rich receptor-like protein kinase
blastp_kegg lcl|pxb:103961776 48 160 + 113 Gaps:3 14.66 764 42.86 9e-17 protein FAR1-RELATED SEQUENCE 5-like
blastp_kegg lcl|pop:POPTR_0011s14880g 51 160 + 110 Gaps:8 14.13 807 42.98 1e-16 hypothetical protein
blastp_kegg lcl|mdm:103436670 48 160 + 113 Gaps:3 14.62 766 42.86 1e-16 protein FAR1-RELATED SEQUENCE 5-like
blastp_kegg lcl|vvi:100259892 48 160 + 113 Gaps:3 14.76 759 42.86 2e-16 protein FAR1-RELATED SEQUENCE 5-like
blastp_kegg lcl|pper:PRUPE_ppa026999mg 48 160 + 113 Gaps:3 14.68 763 42.86 2e-16 hypothetical protein
blastp_uniprot_sprot sp|Q9SZL8|FRS5_ARATH 51 160 + 110 Gaps:3 14.34 788 37.17 1e-15 Protein FAR1-RELATED SEQUENCE 5 OS Arabidopsis thaliana GN FRS5 PE 2 SV 1
rpsblast_cdd gnl|CDD|145965 44 116 + 73 Gaps:2 81.11 90 39.73 1e-10 pfam03101 FAR1 FAR1 DNA-binding domain. This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 45 115 71 PF03101 none FAR1 DNA-binding domain IPR004330
PANTHER 44 160 117 PTHR31669 none none IPR031052

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting