Protein : Qrob_P0020760.2 Q. robur
Protein Identifier  ? Qrob_P0020760.2 Organism . Name  Quercus robur
Score  91.1 Score Type  egn
Protein Description  (M=1) KOG0263//KOG0266//KOG0267//KOG0272//KOG0289//KOG0291//KOG0315//KOG0318//KOG4283//KOG4532 - Transcription initiation factor TFIID subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]. // WD40 repeat-containing protein [General function prediction only]. // Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control cell division chromosome partitioning]. // U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]. // mRNA splicing factor [General function prediction only]. // WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]. // G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]. // WD40 repeat stress protein/actin interacting protein [Cytoskeleton]. // Transcription-coupled repair protein CSA contains WD40 domain [Transcription Replication recombination and repair]. // WD40-like repeat containing protein [General function prediction only]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 508  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_034942 1 506 + 506 Gaps:17 99.80 510 75.25 0.0 Transducin/WD40 repeat-like superfamily protein isoform 1
blastp_kegg lcl|vvi:100267825 1 506 + 506 Gaps:57 99.78 450 81.29 0.0 uncharacterized LOC100267825
blastp_kegg lcl|pmum:103333004 1 507 + 507 Gaps:58 100.00 449 77.06 0.0 uncharacterized WD repeat-containing protein C2A9.03
blastp_kegg lcl|pxb:103959047 1 507 + 507 Gaps:60 100.00 449 77.06 0.0 uncharacterized WD repeat-containing protein C2A9.03-like
blastp_kegg lcl|cic:CICLE_v10001120mg 1 507 + 507 Gaps:67 100.00 452 77.65 0.0 hypothetical protein
blastp_kegg lcl|cit:102614324 1 507 + 507 Gaps:67 100.00 452 77.43 0.0 uncharacterized LOC102614324
blastp_kegg lcl|pop:POPTR_0002s09470g 1 507 + 507 Gaps:65 86.32 519 79.46 0.0 POPTRDRAFT_1071693 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1034310 1 507 + 507 Gaps:60 100.00 447 80.76 0.0 WD-repeat protein putative
blastp_kegg lcl|mdm:103444472 1 502 + 502 Gaps:58 80.43 552 76.80 0.0 uncharacterized WD repeat-containing protein C2A9.03-like
blastp_kegg lcl|fve:101308765 1 507 + 507 Gaps:59 100.00 456 76.10 0.0 uncharacterized WD repeat-containing protein C2A9.03-like
blastp_pdb 1erj_C 229 505 + 277 Gaps:25 71.76 393 25.89 2e-11 mol:protein length:393 TRANSCRIPTIONAL REPRESSOR TUP1
blastp_pdb 1erj_B 229 505 + 277 Gaps:25 71.76 393 25.89 2e-11 mol:protein length:393 TRANSCRIPTIONAL REPRESSOR TUP1
blastp_pdb 1erj_A 229 505 + 277 Gaps:25 71.76 393 25.89 2e-11 mol:protein length:393 TRANSCRIPTIONAL REPRESSOR TUP1
blastp_pdb 2g99_B 340 487 + 148 Gaps:2 48.05 308 25.00 1e-10 mol:protein length:308 WD-repeat protein 5
blastp_pdb 2g99_A 340 487 + 148 Gaps:2 48.05 308 25.00 1e-10 mol:protein length:308 WD-repeat protein 5
blastp_pdb 2h9p_A 340 487 + 148 Gaps:2 44.98 329 25.00 1e-10 mol:protein length:329 WD-repeat protein 5
blastp_pdb 2h9l_A 340 487 + 148 Gaps:2 44.98 329 25.00 1e-10 mol:protein length:329 WD-repeat protein 5
blastp_pdb 4ery_A 340 487 + 148 Gaps:2 47.44 312 25.00 1e-10 mol:protein length:312 WD repeat-containing protein 5
blastp_pdb 4erq_C 340 487 + 148 Gaps:2 47.44 312 25.00 1e-10 mol:protein length:312 WD repeat-containing protein 5
blastp_pdb 4erq_B 340 487 + 148 Gaps:2 47.44 312 25.00 1e-10 mol:protein length:312 WD repeat-containing protein 5
blastp_uniprot_sprot sp|Q9Y7K5|YGI3_SCHPO 71 496 + 426 Gaps:79 82.39 426 33.05 9e-32 Uncharacterized WD repeat-containing protein C2A9.03 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPBC2A9.03 PE 4 SV 2
blastp_uniprot_sprot sp|Q8YTC2|Y2800_NOSS1 285 507 + 223 Gaps:47 46.03 1258 45.94 2e-17 Uncharacterized WD repeat-containing protein alr2800 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN alr2800 PE 4 SV 1
blastp_uniprot_sprot sp|Q00808|HETE1_PODAS 285 487 + 203 Gaps:26 31.49 1356 54.80 6e-17 Vegetative incompatibility protein HET-E-1 OS Podospora anserina GN HET-E1 PE 4 SV 1
blastp_uniprot_sprot sp|Q8YRI1|YY46_NOSS1 285 487 + 203 Gaps:41 41.02 1526 48.56 6e-16 Uncharacterized WD repeat-containing protein alr3466 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN alr3466 PE 4 SV 1
blastp_uniprot_sprot sp|P49695|PKWA_THECU 276 487 + 212 Gaps:40 39.22 742 50.17 9e-14 Probable serine/threonine-protein kinase PkwA OS Thermomonospora curvata GN pkwA PE 3 SV 1
blastp_uniprot_sprot sp|Q93847|YZLL_CAEEL 340 507 + 168 Gaps:7 43.29 395 29.24 2e-13 Uncharacterized WD repeat-containing protein K04G11.4 OS Caenorhabditis elegans GN K04G11.4 PE 4 SV 1
blastp_uniprot_sprot sp|O61585|KTNB1_STRPU 260 487 + 228 Gaps:12 32.75 690 38.94 4e-13 Katanin p80 WD40 repeat-containing subunit B1 OS Strongylocentrotus purpuratus GN KATNB1 PE 1 SV 1
blastp_uniprot_sprot sp|Q54KL5|WDR5_DICDI 340 487 + 148 Gaps:2 44.18 335 27.70 7e-13 WD repeat-containing protein 5 homolog OS Dictyostelium discoideum GN wdr5 PE 3 SV 1
blastp_uniprot_sprot sp|Q8BG40|KTNB1_MOUSE 244 487 + 244 Gaps:10 31.61 658 37.98 2e-12 Katanin p80 WD40 repeat-containing subunit B1 OS Mus musculus GN Katnb1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9BVA0|KTNB1_HUMAN 244 487 + 244 Gaps:10 31.76 655 37.98 2e-12 Katanin p80 WD40 repeat-containing subunit B1 OS Homo sapiens GN KATNB1 PE 1 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 375 416 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
Gene3D 247 487 241 G3DSA:2.130.10.10 none none IPR015943
SMART 281 324 44 SM00320 none WD40 repeats IPR001680
SMART 327 365 39 SM00320 none WD40 repeats IPR001680
SMART 368 407 40 SM00320 none WD40 repeats IPR001680
SMART 411 450 40 SM00320 none WD40 repeats IPR001680
Pfam 369 407 39 PF00400 none WD domain, G-beta repeat IPR001680
PANTHER 176 507 332 PTHR22847 none none none
ProSitePatterns 394 408 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
ProSiteProfiles 375 487 113 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
PANTHER 176 507 332 PTHR22847:SF396 none none none
SUPERFAMILY 253 487 235 SSF50978 none none IPR017986

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting