Protein : Qrob_P0020730.2 Q. robur
Protein Identifier  ? Qrob_P0020730.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=1) PTHR10984//PTHR10984:SF28 - ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 378  
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0 Synonyms

0 GO Terms

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100782309 1 377 + 377 Gaps:9 100.00 386 84.97 0.0 endoplasmic reticulum-Golgi intermediate compartment protein 3-like
blastp_kegg lcl|vvi:100250637 1 377 + 377 Gaps:9 100.00 386 84.72 0.0 endoplasmic reticulum-Golgi intermediate compartment protein 3-like
blastp_kegg lcl|rcu:RCOM_1034540 1 377 + 377 Gaps:9 100.00 386 84.72 0.0 Endoplasmic reticulum-Golgi intermediate compartment protein putative
blastp_kegg lcl|pop:POPTR_0005s16700g 1 377 + 377 Gaps:9 100.00 386 83.94 0.0 POPTRDRAFT_716523 hypothetical protein
blastp_kegg lcl|tcc:TCM_034937 1 377 + 377 Gaps:9 100.00 386 84.46 0.0 Endoplasmic reticulum vesicle transporter protein isoform 1
blastp_kegg lcl|pvu:PHAVU_008G172300g 1 377 + 377 Gaps:9 100.00 386 83.68 0.0 hypothetical protein
blastp_kegg lcl|cit:102613724 1 377 + 377 Gaps:9 100.00 386 83.42 0.0 endoplasmic reticulum-Golgi intermediate compartment protein 3-like
blastp_kegg lcl|cam:101504779 1 377 + 377 Gaps:9 100.00 386 83.42 0.0 endoplasmic reticulum-Golgi intermediate compartment protein 3-like
blastp_kegg lcl|gmx:100797114 1 377 + 377 Gaps:9 100.00 386 83.42 0.0 endoplasmic reticulum-Golgi intermediate compartment protein 3-like
blastp_kegg lcl|mtr:MTR_5g062720 1 377 + 377 Gaps:9 100.00 386 82.90 0.0 Endoplasmic reticulum-Golgi intermediate compartment protein
blastp_uniprot_sprot sp|Q803I2|ERGI3_DANRE 3 377 + 375 Gaps:33 99.74 383 51.83 3e-136 Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS Danio rerio GN ergic3 PE 2 SV 1
blastp_uniprot_sprot sp|Q6NVS2|ERGI3_XENTR 5 375 + 371 Gaps:14 98.70 384 51.72 8e-134 Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS Xenopus tropicalis GN ergic3 PE 2 SV 1
blastp_uniprot_sprot sp|Q66KH2|ERGI3_XENLA 5 375 + 371 Gaps:19 98.71 389 51.30 1e-132 Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS Xenopus laevis GN ergic3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CQE7|ERGI3_MOUSE 5 375 + 371 Gaps:15 98.69 383 52.12 1e-126 Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS Mus musculus GN Ergic3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y282|ERGI3_HUMAN 5 375 + 371 Gaps:15 98.69 383 51.32 2e-125 Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS Homo sapiens GN ERGIC3 PE 1 SV 1
blastp_uniprot_sprot sp|Q54DW2|ERGI3_DICDI 4 375 + 372 Gaps:20 99.22 383 51.58 3e-125 Probable endoplasmic reticulum-Golgi intermediate compartment protein 3 OS Dictyostelium discoideum GN ergic3 PE 3 SV 1
blastp_uniprot_sprot sp|Q5EAE0|ERGI3_BOVIN 5 375 + 371 Gaps:23 98.69 383 52.12 3e-125 Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS Bos taurus GN ERGIC3 PE 2 SV 1
blastp_uniprot_sprot sp|Q5R8G3|ERGI3_PONAB 5 375 + 371 Gaps:15 98.69 383 51.06 1e-124 Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS Pongo abelii GN ERGIC3 PE 2 SV 1
blastp_uniprot_sprot sp|Q4R8X1|ERGI3_MACFA 5 375 + 371 Gaps:16 98.69 382 51.46 8e-123 Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS Macaca fascicularis GN ERGIC3 PE 2 SV 1
blastp_uniprot_sprot sp|Q09895|YAI8_SCHPO 6 369 + 364 Gaps:36 97.95 390 35.86 2e-66 Uncharacterized protein C24B11.08c OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC24B11.08c PE 3 SV 1
rpsblast_cdd gnl|CDD|191908 149 357 + 209 Gaps:25 100.00 222 47.75 4e-74 pfam07970 COPIIcoated_ERV Endoplasmic reticulum vesicle transporter. This family is conserved from plants and fungi to humans. Erv46 works in close conjunction with Erv41 and together they form a complex which cycles between the endoplasmic reticulum and Golgi complex. Erv46-41 interacts strongly with the endoplasmic reticulum glucosidase II. Mammalian glucosidase II comprises a catalytic alpha-subunit and a 58 kDa beta subunit which is required for ER localisation. All proteins identified biochemically as Erv41p-Erv46p interactors are localised to the early secretory pathway and are involved in protein maturation and processing in the ER and/or sorting into COPII vesicles for transport to the Golgi.
rpsblast_cdd gnl|CDD|206021 7 110 + 104 none 99.05 105 64.42 1e-47 pfam13850 ERGIC_N Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC). This family is the N-terminal of ERGIC proteins ER-Golgi intermediate compartment clusters otherwise known as Ervs and is associated with family COPIIcoated_ERV pfam07970.
rpsblast_kog gnl|CDD|37878 3 377 + 375 Gaps:35 99.74 379 51.32 1e-118 KOG2667 KOG2667 KOG2667 COPII vesicle protein [Intracellular trafficking secretion and vesicular transport].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 45 377 333 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 149 338 190 PF07970 none Endoplasmic reticulum vesicle transporter IPR012936
Pfam 7 102 96 PF13850 none Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) none
Phobius 21 44 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 377 377 PTHR10984 none none none
Phobius 1 20 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 1 377 377 PTHR10984:SF28 none none none

1 Localization

Analysis Start End Length
TMHMM 21 43 22

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting