Protein : Qrob_P0020710.2 Q. robur
Protein Identifier  ? Qrob_P0020710.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K13153 - U11/U12 small nuclear ribonucleoprotein 25 kDa protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 170  
Kegg Orthology  K13153
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101218865 1 169 + 169 Gaps:4 95.58 181 79.77 3e-92 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
blastp_kegg lcl|cmo:103493787 1 169 + 169 Gaps:4 87.37 198 79.19 1e-91 U11/U12 small nuclear ribonucleoprotein 25 kDa protein
blastp_kegg lcl|vvi:100255803 1 167 + 167 Gaps:7 98.86 176 76.44 3e-90 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
blastp_kegg lcl|tcc:TCM_034316 1 167 + 167 Gaps:4 43.29 395 76.61 8e-87 Ubiquitin-like superfamily protein isoform 1
blastp_kegg lcl|cit:102625053 1 169 + 169 Gaps:9 100.00 178 74.16 4e-86 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
blastp_kegg lcl|sot:102602180 15 167 + 153 none 48.73 314 73.86 2e-81 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
blastp_kegg lcl|mus:103994419 1 167 + 167 Gaps:3 97.14 175 69.41 4e-81 U11/U12 small nuclear ribonucleoprotein 25 kDa protein
blastp_kegg lcl|pmum:103321185 12 167 + 156 none 40.94 381 80.13 4e-80 uncharacterized LOC103321185
blastp_kegg lcl|sly:101252038 15 167 + 153 none 48.73 314 72.55 7e-80 uncharacterized LOC101252038
blastp_kegg lcl|mdm:103440223 1 169 + 169 Gaps:6 100.00 175 72.57 3e-77 U11/U12 small nuclear ribonucleoprotein 25 kDa protein
blastp_pdb 1v2y_A 55 142 + 88 none 83.81 105 40.91 7e-17 mol:protein length:105 3300001G02Rik protein
blastp_uniprot_sprot sp|Q9BV90|SNR25_HUMAN 20 142 + 123 none 93.18 132 41.46 5e-28 U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS Homo sapiens GN SNRNP25 PE 1 SV 1
blastp_uniprot_sprot sp|Q3ZBQ4|SNR25_BOVIN 27 142 + 116 none 94.31 123 41.38 3e-26 U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS Bos taurus GN SNRNP25 PE 2 SV 2
blastp_uniprot_sprot sp|Q8VIK1|SNR25_MOUSE 27 142 + 116 none 94.31 123 41.38 3e-26 U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS Mus musculus GN Snrnp25 PE 1 SV 1

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 167 167 PTHR14942 none none none
PANTHER 1 167 167 PTHR14942:SF0 none none none
SUPERFAMILY 52 148 97 SSF54236 none none IPR029071
Gene3D 51 152 102 G3DSA:3.10.20.90 none none none
ProSiteProfiles 57 142 86 PS50053 none Ubiquitin domain profile. IPR000626

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting