Protein : Qrob_P0020480.2 Q. robur
Protein Identifier  ? Qrob_P0020480.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR23160:SF3 - SYNAPTONEMAL COMPLEX PROTEIN 1-RELATED (PTHR23160:SF3) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 876  
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0 Synonyms

0 GO Terms

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_034907 1 875 + 875 none 100.00 875 75.77 0.0 Myosin heavy chain-related protein
blastp_kegg lcl|pxb:103939719 1 875 + 875 Gaps:2 100.00 875 74.29 0.0 synaptonemal complex protein 1-like
blastp_kegg lcl|pxb:103957941 1 875 + 875 Gaps:8 100.00 881 72.99 0.0 synaptonemal complex protein 1-like
blastp_kegg lcl|pper:PRUPE_ppa015312mg 1 875 + 875 Gaps:14 100.00 863 76.71 0.0 hypothetical protein
blastp_kegg lcl|mdm:103426285 1 875 + 875 Gaps:2 100.00 875 73.37 0.0 synaptonemal complex protein 1-like
blastp_kegg lcl|rcu:RCOM_1035180 1 875 + 875 Gaps:9 100.00 868 71.89 0.0 Ribosome-binding protein putative
blastp_kegg lcl|pop:POPTR_0002s09680g 1 874 + 874 Gaps:7 99.89 874 72.62 0.0 POPTRDRAFT_798758 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10000237mg 1 875 + 875 Gaps:5 100.00 872 71.79 0.0 hypothetical protein
blastp_kegg lcl|cit:102607710 1 875 + 875 Gaps:5 100.00 872 72.02 0.0 synaptonemal complex protein 1-like
blastp_kegg lcl|pmum:103319641 1 875 + 875 Gaps:10 100.00 865 75.61 0.0 synaptonemal complex protein 1-like
blastp_uniprot_sprot sp|Q9LME2|SYCP1_ARATH 1 875 + 875 Gaps:12 100.00 871 57.75 0.0 Synaptonemal complex protein 1 OS Arabidopsis thaliana GN ZYP1A PE 2 SV 1
blastp_uniprot_sprot sp|P61430|SYCP2_ARATH 1 875 + 875 Gaps:25 100.00 856 57.48 0.0 Synaptonemal complex protein 2 OS Arabidopsis thaliana GN ZYP1B PE 2 SV 1
blastp_uniprot_sprot sp|P24043|LAMA2_HUMAN 52 566 + 515 Gaps:87 15.50 3122 24.38 1e-06 Laminin subunit alpha-2 OS Homo sapiens GN LAMA2 PE 1 SV 4
rpsblast_cdd gnl|CDD|31389 50 760 + 711 Gaps:90 67.58 1163 29.64 2e-09 COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning].
rpsblast_cdd gnl|CDD|162739 391 706 + 316 Gaps:52 22.39 1179 25.76 9e-08 TIGR02168 SMC_prok_B chromosome segregation protein SMC common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
rpsblast_cdd gnl|CDD|162740 105 777 + 673 Gaps:143 54.90 1164 33.33 1e-07 TIGR02169 SMC_prok_A chromosome segregation protein SMC primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes but six paralogs (excluded from this family) are found in eukarotes where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex Synechocystis etc) the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved but the central hinge region is skewed in composition and highly divergent.
rpsblast_kog gnl|CDD|35383 47 753 + 707 Gaps:257 55.13 1930 39.85 3e-15 KOG0161 KOG0161 KOG0161 Myosin class II heavy chain [Cytoskeleton].
rpsblast_kog gnl|CDD|35832 355 777 + 423 Gaps:17 31.89 1317 19.05 7e-09 KOG0612 KOG0612 KOG0612 Rho-associated coiled-coil containing protein kinase [Signal transduction mechanisms].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 667 688 22 Coil none none none
Coils 495 523 29 Coil none none none
PANTHER 1 874 874 PTHR23160:SF3 none none none
Coils 418 439 22 Coil none none none
Coils 450 485 36 Coil none none none
PANTHER 1 874 874 PTHR23160 none none none
Coils 157 178 22 Coil none none none
Coils 527 548 22 Coil none none none
Coils 567 600 34 Coil none none none
Coils 641 662 22 Coil none none none
Coils 245 266 22 Coil none none none
Coils 52 101 50 Coil none none none
Coils 358 382 25 Coil none none none
Coils 122 150 29 Coil none none none
Coils 383 404 22 Coil none none none

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 36   Mitochondrion 5 0.017 0.634 NON-PLANT 36